Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J14
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   375   e-104
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    38   0.007
Z81586-6|CAB04697.2|  393|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U49830-16|AAK31480.1|  392|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  375 bits (923), Expect = e-104
 Identities = 163/234 (69%), Positives = 194/234 (82%)
 Frame = +2

Query: 32  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYXERHGYIKGVVKDIIHDPGRGAPLAV 211
           MGR IR QRKGAG +F SH K RKGA KLR LDY ERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60

Query: 212 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEKKM 391
           + FRDPYK+KT K   +A EG++TGQF++CG KA +++GN++PVG +PEGT +CN+E K 
Sbjct: 61  IAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKS 120

Query: 392 GDKGRLARASGNFATVIGHNPDAXRTXVKLPSGAXKVLPSSNRGMVGIVAGGGRIDKPIL 571
           GD+G +ARASGN+ATVI HNPD  +T ++LPSGA KV+ S NR M+G+VAGGGR DKP+L
Sbjct: 121 GDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLL 180

Query: 572 KAGRAYHKYKVKRNCWPYVRGVAMNPVXHPHGGGNHQHIGKASTVKXGTSAGRK 733
           KAGR+YHKYK KRN WP VRGVAMNPV HPHGGGNHQHIG  STV+   SAG+K
Sbjct: 181 KAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKK 234


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 326 GNVMPVGAMPEGTIVCNLEK-KMGDKGRLARASGNFATVIGHNPDAXRTXVKLP 484
           GN  P+G++  GT++ ++E+    D     +A+G  AT++ H  D   T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211


>Z81586-6|CAB04697.2|  393|Caenorhabditis elegans Hypothetical
           protein T05F1.8 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -1

Query: 606 LTLYLWYALPAFKIGLSI-RPPPATIP---TMPLLLDGRTXLAP 487
           LT   W+   +FK+ +++ RPPP  +P      L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPQMPESLKKKLGIPGTTEVAP 352


>U49830-16|AAK31480.1|  392|Caenorhabditis elegans Hypothetical
           protein C33F10.12 protein.
          Length = 392

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -1

Query: 606 LTLYLWYALPAFKIGLSI-RPPPATIP---TMPLLLDGRTXLAP 487
           LT   W+   +FK+ +++ RPPP  +P      L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPRMPESLKKKLGIPGTTEVAP 352


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 143 HGYIKGVVKDIIHDPGRGAPLAVVHFR 223
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 143 HGYIKGVVKDIIHDPGRGAPLAVVHFR 223
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,808,389
Number of Sequences: 27780
Number of extensions: 401958
Number of successful extensions: 1000
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)