Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J13
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    31   0.25 
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    28   1.3  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    27   2.3  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   7.0  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   9.3  

>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 600 DDDNYVNVPRLVSVLQTYKHQEDWYLGR 683
           DDD+++N+PRL  +L+ +  +  +Y GR
Sbjct: 211 DDDSFLNLPRLFEMLKEHVGKSRFYFGR 238


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 174 LLALGYCSLLVYQG---GVNFNFQESRAGVVQVADLSIEPITKTSVDDIELNKNITLND 341
           L  LG  SL+ Y     GV FN     A ++ V DL  E I+  +V D +L+K   +ND
Sbjct: 202 LFLLGDFSLISYVKVLCGV-FNIPNYNAFILSVEDLLPENISFAAVADFQLSKYRAIND 259


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 55  FDYNTTDERKSAEAFASVSAFWR 123
           FD +TTDE  S E ++++S  W+
Sbjct: 21  FDKSTTDESSSKEDYSTMSDLWK 43


>SPAC8C9.06c |||mitochondrial translation regulator
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = +3

Query: 540  KMSVEYDRFLESGKKWFCHFDDDNYVNVPRLVSVLQTYKHQEDWYLGRTSVYEPVKIYXK 719
            K+  EYD  L++ +  +  +DD     + R+ ++  + K  E+     +S    +  +  
Sbjct: 815  KLGFEYDDSLQNKRIIWLLYDDRLDAAIKRVYNIFLSSKRIEELIPDASSQNSIISFFLS 874

Query: 720  PTNKLMFS 743
            P + L FS
Sbjct: 875  PDSPLYFS 882


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 600 DDDNYVNVPRLVSVLQTY 653
           D +++ N+PR VS++Q+Y
Sbjct: 382 DGNDFANIPRYVSMVQSY 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,849
Number of Sequences: 5004
Number of extensions: 62213
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)