Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_J13
(783 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003383-1|AAB54234.1| 379|Caenorhabditis elegans Hypothetical ... 40 0.003
AF039040-4|AAB94182.1| 368|Caenorhabditis elegans Hypothetical ... 38 0.011
AF024490-1|AAB70308.1| 334|Caenorhabditis elegans Hypothetical ... 38 0.011
AF016654-5|AAB66027.1| 348|Caenorhabditis elegans Hypothetical ... 33 0.17
Z81147-11|CAL69739.1| 323|Caenorhabditis elegans Hypothetical p... 33 0.30
AC006742-8|ABB51175.1| 261|Caenorhabditis elegans Hypothetical ... 33 0.30
AC006742-2|AAF60497.3| 261|Caenorhabditis elegans Hypothetical ... 33 0.30
Z81492-10|CAB04029.2| 322|Caenorhabditis elegans Hypothetical p... 31 0.70
U64858-7|AAB18285.2| 340|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z82084-4|CAB04980.1| 667|Caenorhabditis elegans Hypothetical pr... 31 0.93
Z81553-1|CAB04490.2| 327|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z68333-4|CAA92723.2| 271|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical pr... 28 8.7
AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin d... 28 8.7
AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin d... 28 8.7
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 28 8.7
AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin s... 28 8.7
>AF003383-1|AAB54234.1| 379|Caenorhabditis elegans Hypothetical
protein ZC250.2 protein.
Length = 379
Score = 39.5 bits (88), Expect = 0.003
Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Frame = +3
Query: 285 ITKTSVDDIELNKNITLNDIFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQ 464
I K S+ + + +I+ +++ + VKT + + RL ++ TW +D +
Sbjct: 138 IVKCSIPFPKTSNSISDSEVHVMVKTFEGHHVNRLEVLKNTWA----------SDVSRIE 187
Query: 465 HQNQTNGHMVNT-NCSASHQRKHLCCKMSVEYDRFLES---GKKWFCHFDDDNYVNVPRL 632
+ + + T N + + C K + RFL S G KW DDD +N RL
Sbjct: 188 YCSDKEDPAIPTINLGVDNTDRGHCAKTWEIFRRFLGSSGNGAKWLVVADDDTLMNFKRL 247
Query: 633 VSVLQTYKHQEDWYLGRTSVY 695
+L+ Y + +G Y
Sbjct: 248 KQMLELYDSGDKIIIGERYGY 268
>AF039040-4|AAB94182.1| 368|Caenorhabditis elegans Hypothetical
protein T22B11.2 protein.
Length = 368
Score = 37.5 bits (83), Expect = 0.011
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = +3
Query: 360 TTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQTNGHMVNTNCSASHQRKHLCC 539
TT Y TR+P I +TW + + FT+++ + + T H V S+ +
Sbjct: 104 TTSIYHKTRVPAITETWLRRC-DAGHLFTNSDRFLNAS-TPYHTVFDGLPESYYKLFWKT 161
Query: 540 KMSVEYD-RFLESGKKWFCHFDDDNYVNVPRLVSVLQTYKHQEDWYLG 680
++++ Y +++ W+ DDD Y+ V L L T + +++G
Sbjct: 162 RLALLYIYKYVSKDFDWYFKGDDDTYLIVENLQRYLATLDPNKPYFIG 209
>AF024490-1|AAB70308.1| 334|Caenorhabditis elegans Hypothetical
protein C02H6.1 protein.
Length = 334
Score = 37.5 bits (83), Expect = 0.011
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 2/129 (1%)
Frame = +3
Query: 300 VDDIELNKNI-TLNDIFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQ 476
++D E ++ T +F V+T+K Y R+P + TW +F +T +
Sbjct: 72 IEDSEATYDLPTSGQLFCFVETSKKYFNDRVPSMASTWLPRCDNGRFFL---KTPLVDEK 128
Query: 477 TNGHMVNTNCSASHQRKHLCCKMSVEYD-RFLESGKKWFCHFDDDNYVNVPRLVSVLQTY 653
V N S+ +S Y ++ W+ DDDNY + L L T
Sbjct: 129 IPFSTVYRNLEDSYYDLFRKTLLSFYYSYTYISKDFDWYLKADDDNYFMIDHLKEYLDTL 188
Query: 654 KHQEDWYLG 680
+ +LG
Sbjct: 189 DASKPLFLG 197
>AF016654-5|AAB66027.1| 348|Caenorhabditis elegans Hypothetical
protein C17A2.3 protein.
Length = 348
Score = 33.5 bits (73), Expect = 0.17
Identities = 28/117 (23%), Positives = 41/117 (35%)
Frame = +3
Query: 330 TLNDIFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQTNGHMVNTNCS 509
T IF V+T+ Y R+P + TW + FFT T + N +
Sbjct: 98 TSGQIFCFVETSTKYYKDRVPSVASTWLPRC-DHGRFFTKTHLPYPDIAYSTVYRNLRDT 156
Query: 510 ASHQRKHLCCKMSVEYDRFLESGKKWFCHFDDDNYVNVPRLVSVLQTYKHQEDWYLG 680
+ + Y + W+ DDD +V + L L T E YLG
Sbjct: 157 YDDLFRKSIFSLYYSYTS-ISKHFDWYLKTDDDTFVAMDHLREYLNTLNPAEPLYLG 212
>Z81147-11|CAL69739.1| 323|Caenorhabditis elegans Hypothetical
protein T09E11.12 protein.
Length = 323
Score = 32.7 bits (71), Expect = 0.30
Identities = 29/118 (24%), Positives = 44/118 (37%)
Frame = +3
Query: 342 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQTNGHMVNTNCSASHQ 521
+F V+T++ Y R+P I TW + + FF+ T + N S S
Sbjct: 80 LFCFVETSERYMDERVPSIASTWLRRC-DNGRFFSKTPLLNLNITYSTVYKNLEDSYSDL 138
Query: 522 RKHLCCKMSVEYDRFLESGKKWFCHFDDDNYVNVPRLVSVLQTYKHQEDWYLGRTSVY 695
+ Y +S W+ DDD Y + L L T + YLG + Y
Sbjct: 139 FRKSIFGFYYSYVHISKSFD-WYLKADDDTYFAMDHLREYLNTLDPSKPLYLGYKNGY 195
>AC006742-8|ABB51175.1| 261|Caenorhabditis elegans Hypothetical
protein Y38C1AB.1 protein.
Length = 261
Score = 32.7 bits (71), Expect = 0.30
Identities = 27/113 (23%), Positives = 44/113 (38%)
Frame = +3
Query: 342 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQTNGHMVNTNCSASHQ 521
I + T TR IL+TW Q + FFTD++ ++N S H
Sbjct: 22 ILCLIHTATPSHETRAKTILETWVQHC-DDFLFFTDSKMNDSIPHIYYPLLN---SRDHS 77
Query: 522 RKHLCCKMSVEYDRFLESGKKWFCHFDDDNYVNVPRLVSVLQTYKHQEDWYLG 680
+ + D+ + W+ DDD Y + + ++L Y + YLG
Sbjct: 78 WEKIRRVFKYVRDKITKK-YDWYYRADDDTYALMHNMRTLLDNYSPTKHHYLG 129
>AC006742-2|AAF60497.3| 261|Caenorhabditis elegans Hypothetical
protein Y38C1AB.5 protein.
Length = 261
Score = 32.7 bits (71), Expect = 0.30
Identities = 27/113 (23%), Positives = 44/113 (38%)
Frame = +3
Query: 342 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQTNGHMVNTNCSASHQ 521
I + T TR IL+TW Q + FFTD++ ++N S H
Sbjct: 22 ILCLIHTATPSHETRAKTILETWVQHC-DDFLFFTDSKMNDSIPHIYYPLLN---SRDHS 77
Query: 522 RKHLCCKMSVEYDRFLESGKKWFCHFDDDNYVNVPRLVSVLQTYKHQEDWYLG 680
+ + D+ + W+ DDD Y + + ++L Y + YLG
Sbjct: 78 WEKIRRVFKYVRDKITKK-YDWYYRADDDTYALMHNMRTLLDNYSPTKHHYLG 129
>Z81492-10|CAB04029.2| 322|Caenorhabditis elegans Hypothetical
protein E03H4.3 protein.
Length = 322
Score = 31.5 bits (68), Expect = 0.70
Identities = 27/113 (23%), Positives = 41/113 (36%)
Frame = +3
Query: 342 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQTNGHMVNTNCSASHQ 521
IF V+T++ Y R+P I TW + + FF+ T + N S
Sbjct: 80 IFCFVETSERYYNDRVPSIAATWLRRC-DNGRFFSKTPLPSANMTYSTVYKNLEDSFFDL 138
Query: 522 RKHLCCKMSVEYDRFLESGKKWFCHFDDDNYVNVPRLVSVLQTYKHQEDWYLG 680
+ Y + + W+ DDD Y + L L T + YLG
Sbjct: 139 FRKSIFGFYYSY-MHISNSFDWYLKADDDTYFAMDHLREYLNTLDPSKPLYLG 190
>U64858-7|AAB18285.2| 340|Caenorhabditis elegans Hypothetical
protein C16D9.6 protein.
Length = 340
Score = 31.5 bits (68), Expect = 0.70
Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 6/119 (5%)
Frame = +3
Query: 342 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWF----FTDTETKQHQ--NQTNGHMVNTN 503
+F V+T+ Y TR I +TW F F DT N
Sbjct: 98 LFCWVQTSTIYHDTRSLAINETWIHRCDHGQLFTSERFNDTRIPYSTVFKGIPDDYYNLF 157
Query: 504 CSASHQRKHLCCKMSVEYDRFLESGKKWFCHFDDDNYVNVPRLVSVLQTYKHQEDWYLG 680
+ + H+ +S E+D W+ DDD +V V L S L T E YLG
Sbjct: 158 FKSRYAFHHIYTNISSEFD--------WYLKADDDTFVIVENLRSFLSTLNPDEPHYLG 208
>Z82084-4|CAB04980.1| 667|Caenorhabditis elegans Hypothetical
protein ZK1053.4 protein.
Length = 667
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -3
Query: 280 SIDRSATCTTPARLSWKLKLTPPWYTNKLQYPKANSTAAALSILRPPIPKQ 128
S++ S+ T P+ + + PP Y +P + A S+ PP P Q
Sbjct: 193 SLNTSSISTEPSPVQTSILKPPPMYPETASFPHRKIRSGAYSLYPPPQPSQ 243
>Z81553-1|CAB04490.2| 327|Caenorhabditis elegans Hypothetical
protein F56H6.1 protein.
Length = 327
Score = 30.3 bits (65), Expect = 1.6
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 1/114 (0%)
Frame = +3
Query: 342 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQTNGHMVNTNCSASHQ 521
+F V+T+ + R+P I TW + FFT T + N T V N S+
Sbjct: 80 LFCFVETSAVHYDDRVPSIASTWLPKC-DNGRFFTKTPLP-NSNMTYS-TVYLNLKDSYY 136
Query: 522 RKHLCCKMSVEYDRF-LESGKKWFCHFDDDNYVNVPRLVSVLQTYKHQEDWYLG 680
Y + W+ DDD Y + L L T + YLG
Sbjct: 137 DLFRKTTFGFYYSYMHISKSFDWYLKADDDTYFAMDHLKEYLSTLDPTKPLYLG 190
>Z68333-4|CAA92723.2| 271|Caenorhabditis elegans Hypothetical
protein C05C12.4 protein.
Length = 271
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 306 DIELNKNITLNDIFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQN 473
++ NK+ + + S ++Y RL I++ F + E W FT + KQH N
Sbjct: 137 EVVYNKSDSFFKVVGSKSCKIFWEYRRLVILVL--FAIILEMAWRFTKKQQKQHAN 190
>Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical
protein T24D1.1b protein.
Length = 734
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 1/118 (0%)
Frame = +3
Query: 342 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQ-HQNQTNGHMVNTNCSASH 518
I +++ T Y TR + KTW Q + F T+ H++ + + +
Sbjct: 82 ILVAIMTAAKYVDTRAYNVWKTWAQHIPGRVLIFVAEGTESVHEDMPLIRLKGVDDTYPP 141
Query: 519 QRKHLCCKMSVEYDRFLESGKKWFCHFDDDNYVNVPRLVSVLQTYKHQEDWYLGRTSV 692
Q+K + + + WF DDD Y+ L L++ + +G+ +
Sbjct: 142 QKKSFAMVKWLAEN--MADEYDWFLRADDDLYIRGEELALFLRSVDSSKAHIIGQAGL 197
>AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 734
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 1/118 (0%)
Frame = +3
Query: 342 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQ-HQNQTNGHMVNTNCSASH 518
I +++ T Y TR + KTW Q + F T+ H++ + + +
Sbjct: 82 ILVAIMTAAKYVDTRAYNVWKTWAQHIPGRVLIFVAEGTESVHEDMPLIRLKGVDDTYPP 141
Query: 519 QRKHLCCKMSVEYDRFLESGKKWFCHFDDDNYVNVPRLVSVLQTYKHQEDWYLGRTSV 692
Q+K + + + WF DDD Y+ L L++ + +G+ +
Sbjct: 142 QKKSFAMVKWLAEN--MADEYDWFLRADDDLYIRGEELALFLRSVDSSKAHIIGQAGL 197
>AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 736
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 1/118 (0%)
Frame = +3
Query: 342 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQ-HQNQTNGHMVNTNCSASH 518
I +++ T Y TR + KTW Q + F T+ H++ + + +
Sbjct: 84 ILVAIMTAAKYVDTRAYNVWKTWAQHIPGRVLIFVAEGTESVHEDMPLIRLKGVDDTYPP 143
Query: 519 QRKHLCCKMSVEYDRFLESGKKWFCHFDDDNYVNVPRLVSVLQTYKHQEDWYLGRTSV 692
Q+K + + + WF DDD Y+ L L++ + +G+ +
Sbjct: 144 QKKSFAMVKWLAEN--MADEYDWFLRADDDLYIRGEELALFLRSVDSSKAHIIGQAGL 199
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 651 YKHQEDWYLGRTSVYEPVKIYXKPTNKLMFSFW 749
YKH D T V E ++I KP + MF W
Sbjct: 876 YKHSSDPPTEDTPVVEVIEISNKPVRRNMFDQW 908
>AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin
synthase protein.
Length = 726
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 1/118 (0%)
Frame = +3
Query: 342 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQ-HQNQTNGHMVNTNCSASH 518
I +++ T Y TR + KTW Q + F T+ H++ + + +
Sbjct: 74 ILVAIMTAAKYVDTRAYNVWKTWAQHIPGRVLIFVAEGTESVHEDMPLIRLKGVDDTYPP 133
Query: 519 QRKHLCCKMSVEYDRFLESGKKWFCHFDDDNYVNVPRLVSVLQTYKHQEDWYLGRTSV 692
Q+K + + + WF DDD Y+ L L++ + +G+ +
Sbjct: 134 QKKSFAMVKWLAEN--MADEYDWFLRADDDLYIRGEELALFLRSVDSSKAHIIGQAGL 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,206,836
Number of Sequences: 27780
Number of extensions: 355849
Number of successful extensions: 1075
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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