Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_J10
(866 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 44 4e-05
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 31 0.16
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 0.86
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 29 1.1
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 27 2.6
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 4.6
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 27 4.6
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 4.6
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 6.0
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 26 6.0
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 43.6 bits (98), Expect = 4e-05
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +1
Query: 502 STELKNALRSIEWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMKSKM 681
+TEL A+ + L+DL+ + I KNS F +D +E+ RR F+ E+ N++ KM
Sbjct: 38 NTELTYAIDELSETLKDLKAAVEIAMKNSEHFGLDEEELKSRRRFVSELDIELNNIQLKM 97
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 31.5 bits (68), Expect = 0.16
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 216 LLPPRCLPSFRVQFWFCHFFYSRTCIAAQY 127
+L P C R +FW C F + R + AQY
Sbjct: 63 VLNPYCHVDLRARFWICPFCFQRNPLPAQY 92
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 29.1 bits (62), Expect = 0.86
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 529 SIEWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTF-IEATKQEVKNMKSKMSLNRNRDN 705
S+ D DL+DT ++EKN+S F ID + I R I +++ + K+ L + +
Sbjct: 1186 SLNADNLDLKDTNGVLEKNASDF-IDFQGIKSRYEHKISDLLNQLQKERCKVGLLKQKTE 1244
Query: 706 DGTAREPLLGDDSP 747
+ + + L +SP
Sbjct: 1245 NRSVTQHTLDGNSP 1258
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 216 LLPPRCLPSFRVQFWFCHFFYSRTCIAAQYIAVCN 112
+L P C R +FW C F R + QY + N
Sbjct: 63 VLNPYCHIDTRAKFWICPFCLQRNMLPPQYKDISN 97
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 198 LPSFRVQFWFCHFFYSRTCIAAQYI 124
+ S + WFC FF+ CI+A YI
Sbjct: 304 IQSIHLGLWFC-FFFLTACISALYI 327
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 538 WDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMKSKMSLNRN 696
W L LE +IS ++ K D+ ++ +RR E TK+ K + + S+ RN
Sbjct: 236 WKLFHLEKSISSNMAEVTRLKADSIQLIERRD--ENTKEIEKLKEKEGSIRRN 286
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/79 (24%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Frame = +1
Query: 517 NALRSIEWDLEDLEDTI----SIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMKSKMS 684
N + S D++ L +I IV + + +F++ E +RR +IE + +E+++ ++++
Sbjct: 439 NLIHSSLTDIDALRPSIIQLQDIVTEANKEFQLLRAEREERRRYIETSSRELEDKDAEIA 498
Query: 685 LNRNR---DNDGTAREPLL 732
+ D D +A++ LL
Sbjct: 499 AQAYKAKVDQDTSAKQGLL 517
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/31 (29%), Positives = 13/31 (41%)
Frame = +1
Query: 460 KTPIIASSPEVEWTSTELKNALRSIEWDLED 552
+TP++A+ W T WD ED
Sbjct: 924 QTPMVANGTNTSWGQTPAYGGFSETNWDTED 954
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +1
Query: 511 LKNALRSIEWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMKSKMSLN 690
L+ ++ +I +L +L D ++ +S K+ +K + R E KQ+ K + L
Sbjct: 153 LQTSIDTIRNELNELRDQLN----DSESKKLSDKFVEIRSELDEVRKQQDGYYKDQRKLI 208
Query: 691 RNRDNDGTAREPL 729
RD++ TA + L
Sbjct: 209 AERDDEKTALDDL 221
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +1
Query: 430 GLYLRWQEICKTPIIASSP---EVEWTSTE 510
GLYL W+ KT +++SS E +W S E
Sbjct: 471 GLYLIWKIYKKTKLVSSSEADLETDWKSLE 500
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,449,261
Number of Sequences: 5004
Number of extensions: 69798
Number of successful extensions: 206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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