Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_J10
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0894 - 8797302-8797355,8798393-8799082,8799201-8799315,879... 38 0.008
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 33 0.22
10_08_0328 - 16805296-16806121,16806493-16807274 31 1.6
03_02_0463 - 8673313-8673639,8674040-8674126,8674710-8674790,867... 30 2.1
02_03_0335 + 17882461-17882527,17882616-17884723 30 2.1
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 29 4.8
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819... 29 6.4
03_01_0138 - 1089063-1089266,1089590-1089671,1089937-1090390,109... 29 6.4
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 6.4
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 28 8.4
05_01_0453 - 3592555-3592897,3592997-3593067,3593372-3593465,359... 28 8.4
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 28 8.4
>08_01_0894 -
8797302-8797355,8798393-8799082,8799201-8799315,
8799955-8800082
Length = 328
Score = 38.3 bits (85), Expect = 0.008
Identities = 21/78 (26%), Positives = 43/78 (55%)
Frame = +1
Query: 475 ASSPEVEWTSTELKNALRSIEWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQ 654
A+ E+ ELK AL + +W LE E IS+ ++ K+ ++ + RR F+ A +
Sbjct: 59 ANLEELSDLQRELKTALGTAKWQLEQFERAISM---SNDKYSLEEGTLARRRQFVVAMED 115
Query: 655 EVKNMKSKMSLNRNRDND 708
++ ++ +++ + + DND
Sbjct: 116 QISQVEKQIN-DYSIDND 132
>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 33.5 bits (73), Expect = 0.22
Identities = 28/124 (22%), Positives = 54/124 (43%)
Frame = +1
Query: 352 EQGIENKASSSEL*TGEVFKALNKTRGLYLRWQEICKTPIIASSPEVEWTSTELKNALRS 531
+QG EN+ + L + F+ + G E T + S+ ++S KN
Sbjct: 1385 DQGTENENRNQNLVNTDSFECGVEPHGTLKTTHETLPTVQVVSTSGDTFSS---KNEQND 1441
Query: 532 IEWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMKSKMSLNRNRDNDG 711
+ W+ ++ D + E N + K + I E K+E NM++K+ ++ R+ND
Sbjct: 1442 VPWEDQNKSDA-EVSESNQTAPKESERTIPPEHEDREEEKEE--NMENKIEISIGRENDE 1498
Query: 712 TARE 723
+ +
Sbjct: 1499 VSEQ 1502
>10_08_0328 - 16805296-16806121,16806493-16807274
Length = 535
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 751 NFGNNWTSTPKYTKYSKLXNQPTVPIASIF 840
+ GNNW + P Y K+S + PTV S+F
Sbjct: 172 DLGNNWLTNPDYRKFSTM---PTVKFLSLF 198
>03_02_0463 -
8673313-8673639,8674040-8674126,8674710-8674790,
8674896-8675048,8675129-8675185,8675293-8675569,
8675634-8675749,8676372-8676523,8676627-8676816,
8676935-8677345
Length = 616
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 323 WQNALQCATAEDLFRGGRTHNKPCLDSPHNSPTLSIYYH 207
W N + AT ED F+ G++ L HNS I +H
Sbjct: 258 WVNLDRHATTEDAFQDGKSRLNLLLSKVHNSNVFYILFH 296
>02_03_0335 + 17882461-17882527,17882616-17884723
Length = 724
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 457 CKTPIIASSPEVEWTSTELKNALRSIEWDLEDLEDTISIVEKNSS 591
C TPI+ +SP E S ++N L +E L D +S + SS
Sbjct: 526 CSTPILVTSPVGETISNLIRNGLFGVEDALRCCHDCLSALAAASS 570
>01_05_0320 - 20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 29.1 bits (62), Expect = 4.8
Identities = 25/83 (30%), Positives = 36/83 (43%)
Frame = +1
Query: 445 WQEICKTPIIASSPEVEWTSTELKNALRSIEWDLEDLEDTISIVEKNSSKFKIDNKEICD 624
W+ +T + S+ E E T+ L A EW E L D + +VEK ++ CD
Sbjct: 859 WKSCKQTILTRSTMEAELTA--LDTATVEAEWLRELLMD-LPVVEKPVPAILMN----CD 911
Query: 625 RRTFIEATKQEVKNMKSKMSLNR 693
+T I NMKS + R
Sbjct: 912 NQTVIIKVNSSKDNMKSSRHIKR 934
>07_03_1339 +
25879246-25881154,25881502-25881696,25881777-25881928,
25882147-25882607,25883723-25883810,25884066-25884135,
25884288-25884361,25884456-25884524,25884647-25884724,
25884946-25885070,25885168-25885240,25885508-25885566,
25885650-25886027,25886134-25886236,25886332-25886544
Length = 1348
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 466 PIIASSPEVEWTSTELKNALRSIEWDLEDLEDTI 567
P++ P EW TELK+ LR + ++ L+D +
Sbjct: 5 PVLNDRPIDEWKVTELKDELRRRDLSIKGLKDDL 38
>03_01_0138 -
1089063-1089266,1089590-1089671,1089937-1090390,
1091094-1091634
Length = 426
Score = 28.7 bits (61), Expect = 6.4
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 463 TPIIASSPEVEWTSTELKNALRSI-EWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFI 639
TPIIASSP T T +NA SI E+ +E + ++ N+ K +D + + T
Sbjct: 229 TPIIASSPTSSRTPTPQRNAEISIGEFGPNKMEMSEEELQMNTRKEIMDLGQRLGKTTIA 288
Query: 640 EATKQEVKNMKS 675
+E K+ S
Sbjct: 289 AWASKEEKSTTS 300
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/50 (22%), Positives = 29/50 (58%)
Frame = +1
Query: 508 ELKNALRSIEWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQE 657
+L+ + +++ DLE + IS+++KN+ + ++ N + + ++ K E
Sbjct: 737 QLEASFKNLGNDLEQKFEQISVMQKNNEELELANSNLQNELAMVQEQKNE 786
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Frame = +3
Query: 30 HYFF--SKFCFIHCTMIHF 80
H+FF K C IHC+++HF
Sbjct: 855 HFFFLWCKCCTIHCSLVHF 873
>05_01_0453 -
3592555-3592897,3592997-3593067,3593372-3593465,
3593547-3593614,3593694-3593760,3593924-3594054,
3594145-3594252,3594671-3594757,3594991-3595056,
3595564-3595630,3596116-3596192,3596358-3596417,
3597363-3597480,3597833-3597906,3598216-3598312,
3599328-3599380,3599535-3599630,3599768-3599965,
3600556-3600722,3600813-3600882,3601428-3601448,
3602851-3602982
Length = 754
Score = 28.3 bits (60), Expect = 8.4
Identities = 24/91 (26%), Positives = 40/91 (43%)
Frame = +1
Query: 418 NKTRGLYLRWQEICKTPIIASSPEVEWTSTELKNALRSIEWDLEDLEDTISIVEKNSSKF 597
N R L +R I K I+A S ++ K R +E + ED ++ K ++
Sbjct: 351 NTNRSLIMRKFVIDKLKILADS----LANSSSKAEQRILE-NRRQKEDALNFRVKKENEV 405
Query: 598 KIDNKEICDRRTFIEATKQEVKNMKSKMSLN 690
KE+ D +E + E++ K+SLN
Sbjct: 406 STVEKEVLDEIAELEKQRDELEAQLKKVSLN 436
>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +1
Query: 487 EVEWTSTELKNALRSIEWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEV 660
E E + EL E +E L+DT+ +E+ ++ + +NK + + I T + +
Sbjct: 992 EAERRNEELIKKFEGAEKKIEQLQDTVQRLEEKATNMESENKVLRQQAVAISPTAKSL 1049
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,111,410
Number of Sequences: 37544
Number of extensions: 413367
Number of successful extensions: 1075
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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