Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_J10
(866 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81486-5|CAB03987.1| 570|Caenorhabditis elegans Hypothetical pr... 36 0.050
AF026208-2|AAB71269.3| 774|Caenorhabditis elegans Prion-like-(q... 33 0.20
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 33 0.26
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 33 0.26
AC084158-19|AAK68582.1| 120|Caenorhabditis elegans Hypothetical... 33 0.26
U41027-4|AAC48196.2| 455|Caenorhabditis elegans Hypothetical pr... 32 0.61
U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical pr... 32 0.61
U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t prot... 31 1.4
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 31 1.4
U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 31 1.4
AL132948-43|CAB61061.2| 511|Caenorhabditis elegans Hypothetical... 30 1.9
U00037-6|AAA50658.1| 419|Caenorhabditis elegans Osmotic avoidan... 30 2.5
AF016661-1|AAB66049.2| 514|Caenorhabditis elegans Hypothetical ... 30 2.5
AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical ... 29 3.3
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p... 29 4.3
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p... 29 4.3
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 29 4.3
AF038614-2|AAB92061.2| 321|Caenorhabditis elegans Serpentine re... 29 4.3
U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical pr... 29 5.7
U80447-7|AAB37811.1| 518|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF068717-3|AAC17762.2| 361|Caenorhabditis elegans Serpentine re... 28 9.9
>Z81486-5|CAB03987.1| 570|Caenorhabditis elegans Hypothetical
protein C53A5.6 protein.
Length = 570
Score = 35.5 bits (78), Expect = 0.050
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +1
Query: 514 KNALRSIEWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMKSKMSLNR 693
K +IE ++E + DTI++V+ ++ N EI + + TKQ V +
Sbjct: 225 KTHFNNIEAEMEKISDTIALVKDAGTRLDFLNNEIEEHDRIVFQTKQPVTKANFVFASQD 284
Query: 694 N---RDNDGTAREPLL-GDDSPMNFGNNWT 771
D +AREPLL G P N G WT
Sbjct: 285 PVLVADRKQSAREPLLIGVYDPKNRG--WT 312
>AF026208-2|AAB71269.3| 774|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 40
protein.
Length = 774
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 549 FQIPFNAAQCIFQFSRSPFYFWTTCNYWSLTN 454
FQ PF+ Q F ++++PFY T NYW N
Sbjct: 437 FQQPFHQQQQQFYYTQAPFYGQQTQNYWGQQN 468
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 33.1 bits (72), Expect = 0.26
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 550 DLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMKSKMSLNRNRDNDGTAREPL 729
DLED +++K S K K KE ++R + K + KN KSK S + D+DG+ E
Sbjct: 264 DLED---VMKKKSKKEK--KKEKKEKRKNKDKKKDKKKNKKSK-SRETDDDSDGSDSEDD 317
Query: 730 LGDDSPMNFGNNWTSTPKY-TKYSK 801
+ S S+P+Y +KY K
Sbjct: 318 WKEKSSKRIKREVESSPEYRSKYIK 342
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 33.1 bits (72), Expect = 0.26
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 550 DLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMKSKMSLNRNRDNDGTAREPL 729
DLED +++K S K K KE ++R + K + KN KSK S + D+DG+ E
Sbjct: 264 DLED---VMKKKSKKEK--KKEKKEKRKNKDKKKDKKKNKKSK-SRETDDDSDGSDSEDD 317
Query: 730 LGDDSPMNFGNNWTSTPKY-TKYSK 801
+ S S+P+Y +KY K
Sbjct: 318 WKEKSSKRIKREVESSPEYRSKYIK 342
>AC084158-19|AAK68582.1| 120|Caenorhabditis elegans Hypothetical
protein Y69A2AR.8 protein.
Length = 120
Score = 33.1 bits (72), Expect = 0.26
Identities = 20/88 (22%), Positives = 40/88 (45%)
Frame = +1
Query: 538 WDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMKSKMSLNRNRDNDGTA 717
+++ D+ + +E ++S F +D + + + +K+ K+ KSK S + ++N
Sbjct: 33 YEMYDIGSDVDDIELDTS-FMVDPSTMTEEEA-TKKSKKSKKSSKSKKSTDSKKENKDQK 90
Query: 718 REPLLGDDSPMNFGNNWTSTPKYTKYSK 801
EP G+D G+ S K K
Sbjct: 91 EEPKKGEDEKTKEGSKQKSIEKEKSVEK 118
>U41027-4|AAC48196.2| 455|Caenorhabditis elegans Hypothetical
protein R08E3.3a protein.
Length = 455
Score = 31.9 bits (69), Expect = 0.61
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +1
Query: 487 EVEWTSTELKNALRSIEWDL-EDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEVK 663
+ E + EL+N L + +L E L+D + V+K K NK++ + IE TKQ
Sbjct: 251 QFEEQNRELENKLSKYKPELIEALDDPEAYVQKLMGKIAELNKQMEEDTQIIENTKQ--A 308
Query: 664 NMKSKMSLNRNRDNDGTAREPL 729
N + K+ + N GT E +
Sbjct: 309 NAQKKLQMREELKNLGTDDEEI 330
>U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical
protein R08E3.3b protein.
Length = 516
Score = 31.9 bits (69), Expect = 0.61
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +1
Query: 487 EVEWTSTELKNALRSIEWDL-EDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEVK 663
+ E + EL+N L + +L E L+D + V+K K NK++ + IE TKQ
Sbjct: 251 QFEEQNRELENKLSKYKPELIEALDDPEAYVQKLMGKIAELNKQMEEDTQIIENTKQ--A 308
Query: 664 NMKSKMSLNRNRDNDGTAREPL 729
N + K+ + N GT E +
Sbjct: 309 NAQKKLQMREELKNLGTDDEEI 330
>U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t protein
3, isoform c protein.
Length = 279
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +1
Query: 535 EWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIE-ATKQEVKNMKSKMSLNR-NRDND 708
E + E+L+ EK + + + KE+ +RR + +QE + K+K+ +R NR+ +
Sbjct: 84 EKEEEELKKLKEKQEKRKLEREQEEKEMEERRRAADDRRRQEEEERKAKVDQDRRNREEE 143
Query: 709 GTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLXN 810
+ L G + G N+T K + K N
Sbjct: 144 KNKKNQLSGFQTGGQGGRNFTVAKKAAQNDKFGN 177
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +1
Query: 535 EWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIE-ATKQEVKNMKSKMSLNR-NRDND 708
E + E+L+ EK + + + KE+ +RR + +QE + K+K+ +R NR+ +
Sbjct: 918 EKEEEELKKLKEKQEKRKLEREQEEKEMEERRRAADDRRRQEEEERKAKVDQDRRNREEE 977
Query: 709 GTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLXN 810
+ L G + G N+T K + K N
Sbjct: 978 KNKKNQLSGFQTGGQGGRNFTVAKKAAQNDKFGN 1011
>U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein
3, isoform a protein.
Length = 350
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +1
Query: 535 EWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIE-ATKQEVKNMKSKMSLNR-NRDND 708
E + E+L+ EK + + + KE+ +RR + +QE + K+K+ +R NR+ +
Sbjct: 84 EKEEEELKKLKEKQEKRKLEREQEEKEMEERRRAADDRRRQEEEERKAKVDQDRRNREEE 143
Query: 709 GTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLXN 810
+ L G + G N+T K + K N
Sbjct: 144 KNKKNQLSGFQTGGQGGRNFTVAKKAAQNDKFGN 177
>AL132948-43|CAB61061.2| 511|Caenorhabditis elegans Hypothetical
protein Y39B6A.41 protein.
Length = 511
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 270 NSQQTLLRFTPQ*PHTINLLPPRCLPSFRVQFWFCHFFYSRTCIAA 133
N + T+ +FT P I +L P+ R QF F F + TC AA
Sbjct: 399 NIRATVSQFTQVPPIGIAVLEVFMFPTLRSQFGFTMFLFLATCCAA 444
>U00037-6|AAA50658.1| 419|Caenorhabditis elegans Osmotic avoidance
abnormal protein10 protein.
Length = 419
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 625 RRTFIEATKQEVKNMKSKMSLNRNRDNDGTAREPLL-GDDSPMNFGNNWTSTPKYTKYSK 801
+ + IE T ++ ++SK+ N T + G SP T+T K
Sbjct: 22 KSSVIETTTKKTSGIESKLLPNELPSTGTTGTSGVKNGASSPKTSPAKTTTTTTTVVTQK 81
Query: 802 LXNQPTVPIASI 837
+ NQPT PI+++
Sbjct: 82 VSNQPTAPISTL 93
>AF016661-1|AAB66049.2| 514|Caenorhabditis elegans Hypothetical
protein F02E11.2 protein.
Length = 514
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -1
Query: 122 LYVTNTLRILIIKYKMYHSTVYKTKLRKKIVILYIHLLY 6
++ ++ +I II ++H + K KL+KK+ I Y+ +++
Sbjct: 341 VFKSSVFKIQIISKVIFHPEISKKKLQKKVYIPYLFIIH 379
>AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical
protein Y113G7A.3 protein.
Length = 821
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 216 LLPPRCLPSFRVQFWFCHFFYSRTCIAAQYIAV 118
+L P C +R + W C F +R A Y A+
Sbjct: 73 ILNPLCAVDYRAKIWMCPFCNNRNPFPAHYAAI 105
>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 487 EVEWTSTELKNALRSIEWDLEDLEDTISIVEKNSSKFKIDNKEICDRRT 633
++E EL+ R W L+ ++ I+++N + + +NK + +RT
Sbjct: 873 QLEQAQHELEKKKREYMWKLQQKDEFYEIMDRNVKETEKENKRLLRKRT 921
>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 487 EVEWTSTELKNALRSIEWDLEDLEDTISIVEKNSSKFKIDNKEICDRRT 633
++E EL+ R W L+ ++ I+++N + + +NK + +RT
Sbjct: 873 QLEQAQHELEKKKREYMWKLQQKDEFYEIMDRNVKETEKENKRLLRKRT 921
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 508 ELKNALRSIEWD----LEDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMKS 675
E+KN +RS D + EDT++ +E K + K+ + +E TK+EV+ K
Sbjct: 683 EVKNVIRSDYTDCLNKVRKAEDTLAKIENKYKKESEEVKKTGKNKDKVEKTKEEVEKAKE 742
Query: 676 K 678
+
Sbjct: 743 E 743
>AF038614-2|AAB92061.2| 321|Caenorhabditis elegans Serpentine
receptor, class v protein4 protein.
Length = 321
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 533 MLRSAFFNSVEVHSTSGLLAIIGVLQISCQRRYKPRVLFSALN 405
+ +S+FF + +H+ + LL + V ++ R+Y+ LF A N
Sbjct: 42 VFKSSFFLIIRMHAITDLLMFLYVELVARPRKYRVHNLFEAAN 84
>U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical
protein T05A12.3 protein.
Length = 655
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 583 NSSKFKIDNKEICDRRTFIEATKQEV--KNMKSKMSLNRNRDNDG 711
+SSK D K + R E +Q++ K K K ++NR RD+ G
Sbjct: 499 SSSKSNGDTKRSYEARRMAELREQQMREKERKKKKAMNRERDSRG 543
>U80447-7|AAB37811.1| 518|Caenorhabditis elegans Hypothetical
protein F55F8.7 protein.
Length = 518
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 508 ELKNALRSIEWDLEDLEDTISIVEKNSSKFKIDNKE---ICDRRTFIEATKQEVKNMKSK 678
E+K + E DL D++ T+S K K K+D K+ ++ E K++ K + +
Sbjct: 85 EVKKEKKKSEDDLLDVKKTVS---KEDDKKKVDKKDGSKKLSKKKLKEEKKEKSKKVNKE 141
Query: 679 MSLNRNRDNDGTAREP 726
+++ +D +P
Sbjct: 142 KKISKTESDDEDNEQP 157
>AF068717-3|AAC17762.2| 361|Caenorhabditis elegans Serpentine
receptor, class w protein142 protein.
Length = 361
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 778 PKYTKYSKLXNQPTVPIASIFMTMIFC 858
P T+Y KL PT +A I ++++FC
Sbjct: 146 PMKTEYEKLTKPPTSFLAIIVVSLVFC 172
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,073,195
Number of Sequences: 27780
Number of extensions: 392510
Number of successful extensions: 1182
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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