Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_J09
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo... 163 2e-41
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo... 31 0.26
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 28 1.9
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 5.7
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 26 5.7
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 25 9.9
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 9.9
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 25 9.9
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 25 9.9
>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 163 bits (397), Expect = 2e-41
Identities = 82/179 (45%), Positives = 111/179 (62%), Gaps = 2/179 (1%)
Frame = +2
Query: 71 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 250
EV I SAVRTPM + A+ER I ++ EV++GNV SANLG
Sbjct: 5 EVYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLG 64
Query: 251 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 430
Q PARQ + AGLP+S +CTTVNKVCASGMK+ +L AQ + TG +I++AGG ESMSN P
Sbjct: 65 QNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAP 124
Query: 431 FYLKRGE--TSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKNYKLLDKIKMNMLSI 601
+Y + YG ++LVDG++ DGL+D Y+ MGN AE A+ + +D+ + +I
Sbjct: 125 YYAPKNRFGAKYGNVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHS-IDRASQDAFAI 182
Score = 89.0 bits (211), Expect = 7e-19
Identities = 48/89 (53%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Frame = +1
Query: 565 ITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRGAP-VIFAEDEEYKRVNFEKF 741
I R QD +A++SYKR+ A KAF E+VPV VP RG P + EDEE K +N +K
Sbjct: 172 IDRASQDAFAISSYKRAQNAQATKAFEQEIVPVEVPVGRGKPNKLVTEDEEPKNLNEDKL 231
Query: 742 TKLSTVFQKENGTVTAGNASTLNDGAAXL 828
+ VF K NGTVTA NASTLNDGA+ L
Sbjct: 232 KSVRAVF-KSNGTVTAANASTLNDGASAL 259
>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 30.7 bits (66), Expect = 0.26
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 311 TVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSN 424
T CA+G +I A ++ G D+I+AGG ES N
Sbjct: 165 TTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCIN 202
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 691 VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNASTLNDGAAXL 828
+IF+ED+E ++F++F S + N + AS L G + L
Sbjct: 445 LIFSEDKEQSSISFQEFVSFSPLSSTLNFALFHQAASKLKTGKSPL 490
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 5.7
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 577 DQDEYAVNSYKRSAAAYEA-KAFVDELVPVPVPQKRGAPVIFAEDEEYKRVNFEK 738
++ +YA +S + A YE K + L+ +PV Q VIF + Y RV EK
Sbjct: 208 NESDYA-SSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRVYVEK 261
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 271 CNICRFAKKYHMYNCKQSMC 330
CN+C + KY NC S C
Sbjct: 102 CNVCGYWGKYACQNCGTSYC 121
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 84 HQQLELLWVLS-EGAYLVYQHQNWALSLLTRQSKE 185
HQ +E W+ S EG L Y ++LSL KE
Sbjct: 125 HQDIE--WITSTEGTVLYYDQSTFSLSLFYPDGKE 157
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +1
Query: 223 WQCLFCKFGPSTCKTSCNICRFAKKYHM 306
W C C F +TSC C F H+
Sbjct: 347 WNCPMCGFSNFQRRTSCFRCSFPGPTHV 374
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 346 RFHARGTYFVYSCTYGTF 293
RF R Y +YSC YG+F
Sbjct: 467 RFLRRLLYHLYSCQYGSF 484
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 747 FCKLFKINSFILFIFSKYYRSPSFLW 670
F KLF+I+ +IL +FS Y + W
Sbjct: 73 FSKLFRISLYILGVFSLYMFRWAIAW 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,250,539
Number of Sequences: 5004
Number of extensions: 66676
Number of successful extensions: 226
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -