Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J07
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1494 - 26976654-26976749,26976945-26977001,26977644-269777...    45   9e-05
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283...    29   4.7  
03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670...    29   4.7  
01_06_1387 + 36944138-36944147,36944272-36944333,36944825-369448...    29   4.7  

>07_03_1494 -
           26976654-26976749,26976945-26977001,26977644-26977712,
           26977892-26977993,26978081-26978149,26979205-26979297,
           26979908-26979959,26980549-26980635,26980720-26980802,
           26980909-26981040,26981132-26981205,26981280-26981341,
           26981428-26981513
          Length = 353

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 7/140 (5%)
 Frame = +3

Query: 426 RAKQTVELLEKKSKSMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLVNNDKRALRLY 605
           R K+ V L  K + ++  +RK       Y  K+F   A  IY + +  + + D  +LR  
Sbjct: 184 RTKEDVILEMKNAYAVSRLRK----KTGYTKKEFYDQAFKIYKEVNTLMAHGDTSSLRKI 239

Query: 606 VTEKAYSEFRH-----NSHLKTIRWKFLESLEPPRVVHARC--TDVISKENIFGQVTVRF 764
           +TE+ +S  ++      S   ++ W+ +E     R + AR    D    +  F Q+T+ F
Sbjct: 240 LTERMHSTIKNELKKRQSMWSSVHWELVEPAVCIRTLRARMIGLDKNDLDKAFIQLTLEF 299

Query: 765 HTRXQLAVYDRFGRLIHGSE 824
            T+ +   Y+  G ++ G +
Sbjct: 300 VTKQKFEAYNTKGEVVSGDK 319


>10_01_0267 -
           2828966-2829340,2831164-2831629,2833390-2833487,
           2833782-2834078,2834287-2834694
          Length = 547

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 270 PPHKLRQKMKEKGVLPPRPWMERPFYISATGGVFEAYVP 386
           PPH     +   G + P P    P + S   G+F A VP
Sbjct: 483 PPHPAAAALSPPGAIAPAPASMLPPFNSTAAGIFAAPVP 521


>03_06_0470 +
           34164873-34165856,34166335-34166568,34166680-34167006,
           34168426-34168716
          Length = 611

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 284 QFMWWIRRVVFIKIWKVYLKEFLSTFLFK 198
           QF+W I R +    +  +LK ++STF FK
Sbjct: 398 QFLWRIERQIGRPAFDEFLKNYISTFKFK 426


>01_06_1387 +
           36944138-36944147,36944272-36944333,36944825-36944865,
           36945217-36945286,36946146-36946826,36946907-36946981,
           36947057-36947163,36947264-36947370,36947463-36947522,
           36947616-36947689,36947788-36947838,36948009-36948058,
           36948079-36948123,36948161-36948221,36948284-36948349,
           36948700-36948789,36948875-36948940,36949039-36949134,
           36949219-36949308,36949371-36949388
          Length = 639

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 660 RWKFLESLEPPRVVHARCTDVISKENIFGQVTVRFHTR 773
           RW     +E P  +   CT +     IF ++  +F TR
Sbjct: 284 RWADETGMETPDALSINCTSLAKTHEIFSKILAKFQTR 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,107,163
Number of Sequences: 37544
Number of extensions: 493027
Number of successful extensions: 1276
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)