Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J07
         (854 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130384-1|AAI30385.1|  306|Homo sapiens mitochondrial ribosomal...   174   3e-43
BC130382-1|AAI30383.1|  306|Homo sapiens mitochondrial ribosomal...   174   3e-43
AK172741-1|BAD18730.1|  306|Homo sapiens protein ( Homo sapiens ...   174   3e-43

>BC130384-1|AAI30385.1|  306|Homo sapiens mitochondrial ribosomal
           protein L45 protein.
          Length = 306

 Score =  174 bits (424), Expect = 3e-43
 Identities = 79/189 (41%), Positives = 122/189 (64%)
 Frame = +3

Query: 288 QKMKEKGVLPPRPWMERPFYISATGGVFEAYVPPEGDGKASIVSTSRAKQTVELLEKKSK 467
           Q  ++ G++ P    +R  +++ T G+F+AYVPPEGD + S +S     +  E ++K   
Sbjct: 58  QHARKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMA 117

Query: 468 SMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLVNNDKRALRLYVTEKAYSEFRHNSH 647
           S ++IR+IK +D ++  K F   A+DI+I+AH  L N+D   L   VTE  + +   +  
Sbjct: 118 SQVSIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK 177

Query: 648 LKTIRWKFLESLEPPRVVHARCTDVISKENIFGQVTVRFHTRXQLAVYDRFGRLIHGSEI 827
            KT+RW F+ESLEP  VV  RC+ ++++ N++GQ+TVR HTR  LA+YDRFGRL++G E 
Sbjct: 178 YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQED 237

Query: 828 LAKDVLXYI 854
           + KDVL Y+
Sbjct: 238 VPKDVLEYV 246


>BC130382-1|AAI30383.1|  306|Homo sapiens mitochondrial ribosomal
           protein L45 protein.
          Length = 306

 Score =  174 bits (424), Expect = 3e-43
 Identities = 79/189 (41%), Positives = 122/189 (64%)
 Frame = +3

Query: 288 QKMKEKGVLPPRPWMERPFYISATGGVFEAYVPPEGDGKASIVSTSRAKQTVELLEKKSK 467
           Q  ++ G++ P    +R  +++ T G+F+AYVPPEGD + S +S     +  E ++K   
Sbjct: 58  QHARKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMA 117

Query: 468 SMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLVNNDKRALRLYVTEKAYSEFRHNSH 647
           S ++IR+IK +D ++  K F   A+DI+I+AH  L N+D   L   VTE  + +   +  
Sbjct: 118 SQVSIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK 177

Query: 648 LKTIRWKFLESLEPPRVVHARCTDVISKENIFGQVTVRFHTRXQLAVYDRFGRLIHGSEI 827
            KT+RW F+ESLEP  VV  RC+ ++++ N++GQ+TVR HTR  LA+YDRFGRL++G E 
Sbjct: 178 YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQED 237

Query: 828 LAKDVLXYI 854
           + KDVL Y+
Sbjct: 238 VPKDVLEYV 246


>AK172741-1|BAD18730.1|  306|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23902 fis, clone ADKA01604. ).
          Length = 306

 Score =  174 bits (424), Expect = 3e-43
 Identities = 79/189 (41%), Positives = 122/189 (64%)
 Frame = +3

Query: 288 QKMKEKGVLPPRPWMERPFYISATGGVFEAYVPPEGDGKASIVSTSRAKQTVELLEKKSK 467
           Q  ++ G++ P    +R  +++ T G+F+AYVPPEGD + S +S     +  E ++K   
Sbjct: 58  QHARKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMA 117

Query: 468 SMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLVNNDKRALRLYVTEKAYSEFRHNSH 647
           S ++IR+IK +D ++  K F   A+DI+I+AH  L N+D   L   VTE  + +   +  
Sbjct: 118 SQVSIRRIKDYDANFKIKDFPGKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK 177

Query: 648 LKTIRWKFLESLEPPRVVHARCTDVISKENIFGQVTVRFHTRXQLAVYDRFGRLIHGSEI 827
            KT+RW F+ESLEP  VV  RC+ ++++ N++GQ+TVR HTR  LA+YDRFGRL++G E 
Sbjct: 178 YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQED 237

Query: 828 LAKDVLXYI 854
           + KDVL Y+
Sbjct: 238 VPKDVLEYV 246


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,215,505
Number of Sequences: 237096
Number of extensions: 2609224
Number of successful extensions: 5425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5425
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)