Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J07
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006714-4|AAK29715.4|  357|Caenorhabditis elegans Hypothetical ...   140   2e-33
Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    33   0.34 
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    33   0.34 
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    31   1.4  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    31   1.4  
U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical...    30   2.4  
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z27079-10|CAD90180.1|  658|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z27079-9|CAA81596.2|  660|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z49073-5|CAA88890.1| 1122|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    28   7.4  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    28   7.4  
AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF016445-13|AAC69055.3|  371|Caenorhabditis elegans Ligand-gated...    28   9.7  

>AC006714-4|AAK29715.4|  357|Caenorhabditis elegans Hypothetical
           protein Y119D3B.16 protein.
          Length = 357

 Score =  140 bits (338), Expect = 2e-33
 Identities = 87/253 (34%), Positives = 132/253 (52%), Gaps = 11/253 (4%)
 Frame = +3

Query: 129 RLTPALMCNQQSRTTTTKHHNPKFKKERAQKFLKIDLPDFN--EDHTSYPPHKLRQKMKE 302
           R T     N+      T  +   F++ R +K L I+LP+ +  E      P ++R ++ +
Sbjct: 35  RFTGVTRSNKAKANRNTHVNEKLFRRMRGRKTLLIELPEDSAREKEAEMSPGEMRTELLK 94

Query: 303 KGVLP-----PRPWMERPFYISATGGVFEAYVPPEGDGKASIVSTSRAKQTVELLEKKSK 467
           +G+ P     PR W E      +  G+ + YVPPE  G  + V+    +    +  K   
Sbjct: 95  RGINPYKEAQPRVWNEAQVTFQSIYGIADPYVPPENPGSFTDVNNKFDEVKQRIQHKFYN 154

Query: 468 SMMA---IRKIKSFDEDYDSKKFISHAQDIYIKAHESLVNNDKRALRLYVTEKAYSEFRH 638
             M    IRK + F E +D K F + A+DIY++AH +L   DK A+  Y+TE A+++   
Sbjct: 155 WRMGTNRIRKKQGF-EKFDIKTFCAKAEDIYVQAHRALEQRDKTAMYKYITEYAFAKMWP 213

Query: 639 NSHLKTIRWKFLESLEPPRVVHARCTDVISKE-NIFGQVTVRFHTRXQLAVYDRFGRLIH 815
           +    ++R++ +  LEP RVV  RC D   K  N   Q+TVR HTR +LAVYDRFG L+ 
Sbjct: 214 DVENGSVRFELISVLEPSRVVAVRCFDNPPKSGNDIAQITVRMHTRQKLAVYDRFGGLLL 273

Query: 816 GSEILAKDVLXYI 854
           GSE   KDV+ Y+
Sbjct: 274 GSEDEEKDVVEYV 286


>Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical protein
            C54D10.7 protein.
          Length = 1144

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
 Frame = +3

Query: 456  KKSKSMMAIRKIKSFDEDYDS--KKFISHAQD-IYIKAHE-SLVNNDKRALRLYVTEKAY 623
            K+ K +M   ++K+    YD+  K F+   ++ + I A+E  +  N  R     + +K  
Sbjct: 1022 KQEKELMT-EEMKNLQIQYDNTGKSFVWKIKESVEIVAYECGIFENVLREYSNKIQQKTL 1080

Query: 624  SEFRHNSHLKTIRWKF 671
            + F H+S  KTI+W+F
Sbjct: 1081 TSFDHDSITKTIKWQF 1096


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +3

Query: 129  RLTPALMCNQQSRTT-TTKHHNPKFKKERAQKFLKIDLPDFNEDHTSYPPHKLRQKMKEK 305
            ++ P+L  NQQ  TT TT    P+ ++++ Q+  K      N++ T+   ++  +   ++
Sbjct: 1638 KIEPSLTENQQPTTTATTTTTVPQQQQQQQQQ--KSSKKKRNDNRTAQ--NRTAENGVKR 1693

Query: 306  GVLPPRPWMERPFYISATGGVFEAY 380
               PP  W E P Y  A   + E Y
Sbjct: 1694 ATTPPPSWREEPDYDGAEWNIVEDY 1718


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +3

Query: 129  RLTPALMCNQQSRTT-TTKHHNPKFKKERAQKFLKIDLPDFNEDHTSYPPHKLRQKMKEK 305
            ++ P+L  NQQ  TT TT    P+ ++++ Q+  K      N++ T+   ++  +   ++
Sbjct: 1638 KIEPSLTENQQPTTTATTTTTVPQQQQQQQQQ--KSSKKKRNDNRTAQ--NRTAENGVKR 1693

Query: 306  GVLPPRPWMERPFYISATGGVFEAY 380
               PP  W E P Y  A   + E Y
Sbjct: 1694 ATTPPPSWREEPDYDGAEWNIVEDY 1718


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 333 ERPFYISATGGVFEAYVPPE---GDGKASIVSTSRAKQTVELLEKKSKSMMAIRKIKSFD 503
           E P Y+ ATGG  EA   P    GDG  +   T + + T  L + +S SM + R   ++D
Sbjct: 390 EEPAYVGATGGFPEASYQPANYGGDGYETYYDTFKKRGT--LKKGESASMASTRADSAWD 447

Query: 504 E 506
           +
Sbjct: 448 Q 448


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 333 ERPFYISATGGVFEAYVPPE---GDGKASIVSTSRAKQTVELLEKKSKSMMAIRKIKSFD 503
           E P Y+ ATGG  EA   P    GDG  +   T + + T  L + +S SM + R   ++D
Sbjct: 390 EEPAYVGATGGFPEASYQPANYGGDGYETYYDTFKKRGT--LKKGESASMASTRADSAWD 447

Query: 504 E 506
           +
Sbjct: 448 Q 448


>U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical
           protein F18E9.3 protein.
          Length = 378

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 105 VLLKFSALRLTPALMCNQQSRTTTTKHHNPKFKK 206
           +LLK + + L P ++C +  R     H  PKFK+
Sbjct: 2   ILLKIAFISLFPIVLCEKVKRQEQVIHEIPKFKR 35


>AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical
           protein Y71G12B.5 protein.
          Length = 1098

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 508 SSSNDLILRIAIIDFDFFSKSSTVCLAREVDTIEALPSPSGGTYASKT 365
           S  +D+IL +   DF F   + T   A  V TI +LP+    T+  KT
Sbjct: 262 SRDSDIILGLFRPDFTFKGCAGTYNKAEAVKTIMSLPADKNATFTLKT 309


>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical
           protein ZK897.1 protein.
          Length = 1396

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 243 DFNEDHTSYPPHKLRQKMKEKGVLPPRPWMERPF-YISATGGVFEAYVPPEGDGKASIVS 419
           DF EDH S P  +++++    G + PR     P   +S T  +       +G  K S+ S
Sbjct: 56  DFQEDHDSLPIAQVKKRSLLSGAMTPRSSSPAPSDSVSQTNSLKRNNSSSQGRRKDSVQS 115

Query: 420 TSRAKQTVEL 449
            + A+  + +
Sbjct: 116 QTPARSPMRM 125


>Z27079-10|CAD90180.1|  658|Caenorhabditis elegans Hypothetical
           protein T05G5.9b protein.
          Length = 658

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 441 VELLEKKSKSMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLV-NNDKRALRLYVTEK 617
           VEL +++    + + +     E  +  + +  A D+    +E L+  N++ + +L  +EK
Sbjct: 213 VELSDQQGNEKLGLAR--KMAESENRGRILEEAVDVLKSENEKLLAKNEEFSAKLVSSEK 270

Query: 618 AYSEFRHNSH 647
            ++EF+  SH
Sbjct: 271 EFAEFKKKSH 280


>Z27079-9|CAA81596.2|  660|Caenorhabditis elegans Hypothetical
           protein T05G5.9a protein.
          Length = 660

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 441 VELLEKKSKSMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLV-NNDKRALRLYVTEK 617
           VEL +++    + + +     E  +  + +  A D+    +E L+  N++ + +L  +EK
Sbjct: 215 VELSDQQGNEKLGLAR--KMAESENRGRILEEAVDVLKSENEKLLAKNEEFSAKLVSSEK 272

Query: 618 AYSEFRHNSH 647
            ++EF+  SH
Sbjct: 273 EFAEFKKKSH 282


>Z49073-5|CAA88890.1| 1122|Caenorhabditis elegans Hypothetical
           protein ZK970.6 protein.
          Length = 1122

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 174 TTKHHNPKFKKERAQKFLKI 233
           TTKHH+ +  KE  +KF+K+
Sbjct: 583 TTKHHSMQMNKEEKEKFVKL 602


>Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical
           protein K09E4.2 protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 347 IEWTLHPRSWWQNTLLLHLLPQFMWW 270
           + W ++P +WW ++ LLH+    ++W
Sbjct: 386 LSWNVYPSTWW-SSALLHVCHVIIFW 410


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 270 PPHKLRQKMKEKGVLPPRPWMERPFYISATGGVFEAYVPPEGDGKASIVSTSRAK 434
           PP + RQK +     P R   + P  +  TGGV  A  PP     + +  +S +K
Sbjct: 540 PPQQQRQKQQRSQPAPARVPPQVPSQVPVTGGV-AADEPPPPCSYSPVAQSSESK 593


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 270 PPHKLRQKMKEKGVLPPRPWMERPFYISATGGVFEAYVPPEGDGKASIVSTSRAK 434
           PP + RQK +     P R   + P  +  TGGV  A  PP     + +  +S +K
Sbjct: 540 PPQQQRQKQQRSQPAPARVPPQVPSQVPVTGGV-AADEPPPPCSYSPVAQSSESK 593


>AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical
           protein F14D2.6 protein.
          Length = 998

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +3

Query: 63  NKDLK*YKKEMAN-SVLLKFSALRLTPALMCNQQSRTTTTKHHNPKFKK---ERAQKFLK 230
           N  L+ Y+ ++ N S L    +L  TP L  +     TT+ H NPK KK   E  + F  
Sbjct: 690 NGMLEIYETDLPNISFLGNLKSLLGTPRLEFSYTQFNTTSIHDNPKLKKLGLESLKNFTP 749

Query: 231 ID 236
           +D
Sbjct: 750 LD 751


>AF016445-13|AAC69055.3|  371|Caenorhabditis elegans Ligand-gated
           ion channel protein 1 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/62 (30%), Positives = 25/62 (40%)
 Frame = -1

Query: 386 WDICFKDSTCSRYIEWTLHPRSWWQNTLLLHLLPQFMWWIRRVVFIKIWKVYLKEFLSTF 207
           WD  FKD   +    +TLH   W   T  +H  P        +  +K+  V   E   TF
Sbjct: 20  WDDLFKDYDPTLSAIYTLHKSQWINQTATIH--PPITELKLTMAMLKLVDVVEVEEKVTF 77

Query: 206 LF 201
           LF
Sbjct: 78  LF 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,514,816
Number of Sequences: 27780
Number of extensions: 421328
Number of successful extensions: 1132
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)