Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_J05
(487 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF283269-1|AAG15374.1| 114|Anopheles gambiae ribosomal protein ... 203 2e-54
AY341235-1|AAR13799.1| 196|Anopheles gambiae transferrin-like p... 26 0.79
AY341234-1|AAR13798.1| 196|Anopheles gambiae transferrin-like p... 26 0.79
AY341233-1|AAR13797.1| 196|Anopheles gambiae transferrin-like p... 26 0.79
AY341232-1|AAR13796.1| 196|Anopheles gambiae transferrin-like p... 26 0.79
AB090824-1|BAC57923.1| 298|Anopheles gambiae gag-like protein p... 24 3.2
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ... 23 7.3
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein. 23 7.3
U43499-1|AAA93302.1| 278|Anopheles gambiae a-emp protein. 22 9.7
AB090814-1|BAC57903.1| 499|Anopheles gambiae gag-like protein p... 22 9.7
>AF283269-1|AAG15374.1| 114|Anopheles gambiae ribosomal protein S26
protein.
Length = 114
Score = 203 bits (496), Expect = 2e-54
Identities = 93/111 (83%), Positives = 101/111 (90%)
Frame = +2
Query: 44 KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQ 223
+RRNGGR KH RGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+DASVY +
Sbjct: 3 ERRNGGRCKHNRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYSSYV 62
Query: 224 LPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 376
LPKLYAKLHYCVSCAIHSKVVRNRSK+ RRIRTPP+ +FP+DM+R Q QR
Sbjct: 63 LPKLYAKLHYCVSCAIHSKVVRNRSKETRRIRTPPQRSFPKDMNRQQNAQR 113
>AY341235-1|AAR13799.1| 196|Anopheles gambiae transferrin-like
protein.
Length = 196
Score = 25.8 bits (54), Expect = 0.79
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = +2
Query: 68 KHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIND 199
K G+GH + + N C P+ I N+ + + D N+
Sbjct: 50 KEGKGHDRFEKLRNAKACFPEFGGIASIAFVNVGRSRGIFDRNE 93
>AY341234-1|AAR13798.1| 196|Anopheles gambiae transferrin-like
protein.
Length = 196
Score = 25.8 bits (54), Expect = 0.79
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = +2
Query: 68 KHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIND 199
K G+GH + + N C P+ I N+ + + D N+
Sbjct: 50 KEGKGHDRFEKLRNAKACFPEFGGIASIAFVNVGRSRGIFDRNE 93
>AY341233-1|AAR13797.1| 196|Anopheles gambiae transferrin-like
protein.
Length = 196
Score = 25.8 bits (54), Expect = 0.79
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = +2
Query: 68 KHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIND 199
K G+GH + + N C P+ I N+ + + D N+
Sbjct: 50 KEGKGHDRFEKLRNAKACFPEFGGIASIAFVNVGRSRGIFDRNE 93
>AY341232-1|AAR13796.1| 196|Anopheles gambiae transferrin-like
protein.
Length = 196
Score = 25.8 bits (54), Expect = 0.79
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = +2
Query: 68 KHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIND 199
K G+GH + + N C P+ I N+ + + D N+
Sbjct: 50 KEGKGHDRFEKLRNAKACFPEFGGIASIAFVNVGRSRGIFDRNE 93
>AB090824-1|BAC57923.1| 298|Anopheles gambiae gag-like protein
protein.
Length = 298
Score = 23.8 bits (49), Expect = 3.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 17 GSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCV 124
G VR R+ + G + KAV CTN +C+
Sbjct: 243 GHMVRECQGTNRSSLCIRCGAANHKAVNCTNDVKCL 278
>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 1222
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 274 QQSCQEQIEERQKNPYSSQ 330
QQ Q+Q ++RQ+ P S Q
Sbjct: 254 QQLSQQQQQQRQRQPSSQQ 272
>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
Length = 2259
Score = 22.6 bits (46), Expect = 7.3
Identities = 16/75 (21%), Positives = 32/75 (42%)
Frame = +2
Query: 110 CARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVR 289
CA V K + + ++ IR + + DI ASV+ + Y + + +
Sbjct: 808 CATTVRKGRKLYQYTIRLPINSPWKEDILIASVFNECRPDAETVAYLYHIRMELICPIPE 867
Query: 290 NRSKKDRRIRTPPKS 334
++ + R+I P +S
Sbjct: 868 EQNTRGRKIYAPEES 882
>U43499-1|AAA93302.1| 278|Anopheles gambiae a-emp protein.
Length = 278
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 306 TEESVLLPRVTSLGTCHVHRQ 368
T+ S+ PR+T T HV+ +
Sbjct: 176 TDGSIFPPRITKNSTLHVYEK 196
>AB090814-1|BAC57903.1| 499|Anopheles gambiae gag-like protein
protein.
Length = 499
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 63 APSMDVVTLKP*DAQTARGACQRT 134
+P++DVV + P + +A CQ T
Sbjct: 74 SPAVDVVEVMPEEQTSASMECQET 97
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 403,897
Number of Sequences: 2352
Number of extensions: 7978
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 42708759
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -