Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J04
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   1.5  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   2.6  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   6.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   6.0  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    21   7.9  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    21   7.9  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 378 PLIPRMPPYIISTVTSPTLVEP 313
           P +P++PP  +  +  PT++ P
Sbjct: 175 PPLPQVPPLPLPPIFPPTMINP 196


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 254 ILQEKIPKEQEKIREFRKKHG 316
           +L EK+ KE  ++R F +K+G
Sbjct: 262 LLCEKVAKEDIQVRFFEEKNG 282


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -2

Query: 372 IPRMPPYIISTVTSPTLVEP 313
           +P++PP  +  + +PT++ P
Sbjct: 177 LPQVPPLPLPPIFAPTMINP 196


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
 Frame = -2

Query: 408  ASSTEVSQTRPLIPRMPPYI-----ISTVTSPTLVEPCFFRN 298
            ASST    T P++P  P        I T TS      C+F N
Sbjct: 2288 ASSTMAPSTTPMVPDKPVTTTTSRPIGTDTSDDYKVVCYFTN 2329


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 363 CVESKVWFGKPLCW 404
           CV  K   GKP CW
Sbjct: 873 CVTCKCENGKPTCW 886


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 381 RPLIPRMPPYIISTVTSPTLVE 316
           +P +P++PP    T +S + +E
Sbjct: 208 KPTVPKIPPAEFPTTSSSSALE 229


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 381 RPLIPRMPPYIISTVTSPTLVE 316
           +P +P++PP    T +S + +E
Sbjct: 208 KPTVPKIPPAEFPTTSSSSALE 229


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 542 AQAKALSKEWAARAELPAHVVTMLNN 619
           AQ   +   WA +  LP H   M+ N
Sbjct: 282 AQFGPVIDSWATQPVLPTHPYQMIKN 307


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 542 AQAKALSKEWAARAELPAHVVTMLNN 619
           AQ   +   WA +  LP H   M+ N
Sbjct: 282 AQFGPVIDSWATQPVLPTHPYQMIKN 307


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,789
Number of Sequences: 336
Number of extensions: 3288
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)