Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J02
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|...    47   3e-06
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.1  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   8.9  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   8.9  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   8.9  
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.9  

>SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 102

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +2

Query: 179 NAVVVEYCRTSMAALSGSTAGVLGLTGLNGFAFYVFAVVML-WIMFLVKVGPHWSKYFIT 355
           N  VV + R   ++  G  AG+LGLT   G A YV     + +++F +K+  + +KY+  
Sbjct: 2   NPKVVSFVRNLTSSFFGCAAGILGLTSYEGLALYVLGYFFVSFLLFALKMRGNLTKYYQP 61

Query: 356 RQSVLTNGFFGALFTYVLFWTFIYGM 433
                         +YVL WT  Y +
Sbjct: 62  GYKFWIAKILDGAPSYVLTWTLFYSL 87


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = +2

Query: 185 VVVEYCRTSMAALSGSTAGVLGLTGLNGFAFYVFAVVML--WIMFLVKVGPHWSKYFITR 358
           VV  YCR     L+  + G+     +  F F       L  W++  +   P    ++I  
Sbjct: 140 VVPPYCRK---VLTYKSLGIRTAVYVGAFCFVNCFKTRLSNWMLLPISANP----WYIQV 192

Query: 359 QSVLTNGFFGALFTYVLFWTF 421
              +T+GFF  LF   L++ F
Sbjct: 193 AFCVTSGFFSYLFINALYYLF 213


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 376 WILWSIIYICTILDVHLWDGSCLLGY 453
           +ILW + +   +  ++LW   CLL Y
Sbjct: 15  FILWILAHSFFVKIIYLWASGCLLWY 40


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +1

Query: 244 SWSHWAQWLCILRVC--SCNALDNVLSQ-SWTTLEQVF 348
           SW ++  WL I+++C  S N L    +Q SW  L   F
Sbjct: 369 SWEYFNTWLKIIQLCFNSMNPLTKCAAQTSWIRLIHEF 406


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 226 RIHCRCSWSHWAQW 267
           R H +C W  W QW
Sbjct: 26  RPHKKCDWRSWEQW 39


>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 253

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 267 PLSPVRPRTPAVDPDNAAIEVRQYSTTTALFLRAAS 160
           P++P+R +TP ++P++   E+++  T   L L   S
Sbjct: 218 PVTPIRRKTPTINPNS---ELKRLQTFGKLILHKGS 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,271
Number of Sequences: 5004
Number of extensions: 56568
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)