Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J02
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1212 - 24913497-24913718,24914398-24914670                       31   1.3  
01_01_0496 + 3660103-3660315,3660601-3661803,3662950-3663078           30   2.3  
06_03_0894 - 25724257-25724349,25724998-25725543                       29   4.0  
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944...    29   5.3  
02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938     28   7.0  
06_03_0465 + 21049412-21049878,21049947-21050790,21050994-210511...    28   9.3  
02_01_0325 - 2208480-2208674,2208772-2210609,2210980-2211109,221...    28   9.3  

>07_03_1212 - 24913497-24913718,24914398-24914670
          Length = 164

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 215 AALSGSTAGVLGLTGLNGFAFYVFAVVMLWIMFLVKVGPHWS 340
           AA  G+ A +LG      +A    A++ LW MF   V   WS
Sbjct: 28  AAAGGAEAALLGKGRYKAWALAAIALLALWSMFAASVTIRWS 69


>01_01_0496 + 3660103-3660315,3660601-3661803,3662950-3663078
          Length = 514

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 187 GCRILSYFYGSIVRIHCR 240
           GCR+ S+ Y  ++R+HCR
Sbjct: 249 GCRLNSFVYTCLIRVHCR 266


>06_03_0894 - 25724257-25724349,25724998-25725543
          Length = 212

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +3

Query: 120 RNSKKTSQSLWLTVKQLSETMRWLSNTVVLLWQHCQDPLQV--FLVSLGSMAL 272
           R +++T  SL      + ET+R    T +LL + C++P Q+  F VS G+M L
Sbjct: 27  RITEETISSLHYLHLVIKETLRLHPPTPLLLPRECREPCQILGFDVSKGAMVL 79


>01_05_0687 + 24288648-24292746,24293737-24293844,24294333-24294442,
            24295208-24295282
          Length = 1463

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 172  QKQCGGCRILSYFYGSIVRIHCRC 243
            Q  CG CRIL  ++     +HC C
Sbjct: 1370 QMVCGSCRILLAYFRGAGYVHCTC 1393


>02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938
          Length = 574

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 360 RVF*QMDSLEHYLHMYYFGRSFMGWFMFIRLY 455
           R+F Q DS+ H+L  Y F  S + W M  R Y
Sbjct: 329 RLFPQRDSVFHHLGRYLFHPSNVVWGMVTRYY 360


>06_03_0465 +
           21049412-21049878,21049947-21050790,21050994-21051121,
           21051232-21051247
          Length = 484

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 247 WSHWAQWLCILRVC 288
           WS WAQW C+L VC
Sbjct: 347 WSIWAQWCCLL-VC 359


>02_01_0325 -
           2208480-2208674,2208772-2210609,2210980-2211109,
           2211231-2211270,2211409-2211531,2211940-2212030,
           2212396-2212480,2212565-2212720,2212797-2212853,
           2212940-2213110,2213313-2213330,2213479-2213551,
           2213754-2213839,2214348-2214466,2214542-2214641
          Length = 1093

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 223 VRIHCRCSWSHWAQWL 270
           V +H +  W HWA WL
Sbjct: 78  VLVHYQSGWEHWAYWL 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,856,310
Number of Sequences: 37544
Number of extensions: 327510
Number of successful extensions: 803
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)