Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_J02
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036702-9|AAR85906.1| 111|Caenorhabditis elegans Hypothetical ... 76 2e-14
U23528-2|AAK31387.1| 984|Caenorhabditis elegans Calsyntenin/alc... 31 0.89
AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin p... 31 0.89
U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical p... 29 2.7
U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical p... 29 2.7
U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical pr... 29 3.6
U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical pr... 29 3.6
U43282-3|AAA83614.3| 499|Caenorhabditis elegans Glutamate trans... 29 4.7
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 28 6.3
AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in ... 28 6.3
AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in ... 28 6.3
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ... 28 6.3
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 28 6.3
U67952-1|AAB07577.2| 414|Caenorhabditis elegans Hypothetical pr... 28 8.3
U39472-10|AAZ82853.1| 354|Caenorhabditis elegans Serpentine rec... 28 8.3
U20862-3|AAN65283.1| 137|Caenorhabditis elegans Hypothetical pr... 28 8.3
U20862-2|AAK29864.1| 179|Caenorhabditis elegans Hypothetical pr... 28 8.3
AF248541-1|AAF63761.1| 179|Caenorhabditis elegans cysteine-rich... 28 8.3
>AF036702-9|AAR85906.1| 111|Caenorhabditis elegans Hypothetical
protein F33D4.7 protein.
Length = 111
Score = 76.2 bits (179), Expect = 2e-14
Identities = 39/102 (38%), Positives = 53/102 (51%)
Frame = +2
Query: 128 KENKPEPVAYSEAALRNNAVVVEYCRTSMAALSGSTAGVLGLTGLNGFAFYVFAVVMLWI 307
K K Y+ AA+ NN +E+ RT + +G AG+LGLTG GF Y +V + +
Sbjct: 7 KAEKKNDECYNTAAITNNVEALEFGRTCQSCAAGMAAGILGLTGFQGFILYFISVGIQAV 66
Query: 308 MFLVKVGPHWSKYFITRQSVLTNGFFGALFTYVLFWTFIYGM 433
++ VK +W YF R S T L T+VL W F YGM
Sbjct: 67 IWNVKSQGNWLSYFPERNS-FTWSHGNGLLTFVLLWVFFYGM 107
>U23528-2|AAK31387.1| 984|Caenorhabditis elegans
Calsyntenin/alcadein homolog protein1, isoform a
protein.
Length = 984
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -2
Query: 655 KDSELSSASMLCDSD*FNLNTVHNLYLNKYLSNCKI 548
KD + + ++LC+SD FN+N H + Y+ +CK+
Sbjct: 376 KDEQSNKQNILCESDDFNMNRHH---FSVYIRHCKL 408
>AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin
protein.
Length = 984
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -2
Query: 655 KDSELSSASMLCDSD*FNLNTVHNLYLNKYLSNCKI 548
KD + + ++LC+SD FN+N H + Y+ +CK+
Sbjct: 376 KDEQSNKQNILCESDDFNMNRHH---FSVYIRHCKL 408
>U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical
protein T22F3.11b protein.
Length = 375
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 202 SYFYGSIVRIHCRCSWSHWAQWLCI--LRVCSCNALDNVLSQSWTTLEQVF-YNQTECSD 372
+Y+ IV + C S + ++ I +C N + + ++ S TL ++ YN +E
Sbjct: 7 NYYRWIIVGVGFLCLTSICSNFIVINFTFICMKNDMSDAVTDSNGTLRSIYDYNGSE--K 64
Query: 373 KWILWSI 393
KWILW++
Sbjct: 65 KWILWAV 71
>U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical
protein T22F3.11a protein.
Length = 453
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 202 SYFYGSIVRIHCRCSWSHWAQWLCI--LRVCSCNALDNVLSQSWTTLEQVF-YNQTECSD 372
+Y+ IV + C S + ++ I +C N + + ++ S TL ++ YN +E
Sbjct: 7 NYYRWIIVGVGFLCLTSICSNFIVINFTFICMKNDMSDAVTDSNGTLRSIYDYNGSE--K 64
Query: 373 KWILWSI 393
KWILW++
Sbjct: 65 KWILWAV 71
>U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical
protein T13C2.6a protein.
Length = 909
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Frame = -2
Query: 391 CSKESICQNTLSGYKILAPMW---SNFD*EHYPEHYNCKHVECKAIEPSETKNTCSGS*Q 221
C + +++L +K + W FD E + + CK+V C+ E SG
Sbjct: 78 CGEVKSARSSLERFKCIPNKWVCDGEFDCEDKSDEFQCKNVSCQ--EKQFQCEELSGDYS 135
Query: 220 CCHRSTTVFDNHR 182
C T V D R
Sbjct: 136 LCIPETWVCDGQR 148
>U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical
protein T13C2.6b protein.
Length = 911
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Frame = -2
Query: 391 CSKESICQNTLSGYKILAPMW---SNFD*EHYPEHYNCKHVECKAIEPSETKNTCSGS*Q 221
C + +++L +K + W FD E + + CK+V C+ E SG
Sbjct: 80 CGEVKSARSSLERFKCIPNKWVCDGEFDCEDKSDEFQCKNVSCQ--EKQFQCEELSGDYS 137
Query: 220 CCHRSTTVFDNHR 182
C T V D R
Sbjct: 138 LCIPETWVCDGQR 150
>U43282-3|AAA83614.3| 499|Caenorhabditis elegans Glutamate
transporter family protein4 protein.
Length = 499
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 206 TSMAALSGSTAGVLGLTGLNGFAFYVFAVVMLWIMFLVKVGP 331
TS+A+L TAG LG+ + + F V L I+ + + P
Sbjct: 68 TSLASLDSGTAGRLGMVSMIYYTLTTFFAVFLGIVLVSVIKP 109
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = -3
Query: 399 VNNAPKNPFVR-TLCLVIKYLLQCGPT-LTKNIIQS 298
+N+A K+ F +L L++ + LQCGPT + N+ QS
Sbjct: 709 INDANKSSFTSYSLVLMVIHFLQCGPTKVLPNLQQS 744
>AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform b protein.
Length = 871
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = -3
Query: 399 VNNAPKNPFVR-TLCLVIKYLLQCGPT-LTKNIIQS 298
+N+A K+ F +L L++ + LQCGPT + N+ QS
Sbjct: 467 INDANKSSFTSYSLVLMVIHFLQCGPTKVLPNLQQS 502
>AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform d protein.
Length = 807
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = -3
Query: 399 VNNAPKNPFVR-TLCLVIKYLLQCGPT-LTKNIIQS 298
+N+A K+ F +L L++ + LQCGPT + N+ QS
Sbjct: 403 INDANKSSFTSYSLVLMVIHFLQCGPTKVLPNLQQS 438
>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform c protein.
Length = 1036
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = -3
Query: 399 VNNAPKNPFVR-TLCLVIKYLLQCGPT-LTKNIIQS 298
+N+A K+ F +L L++ + LQCGPT + N+ QS
Sbjct: 632 INDANKSSFTSYSLVLMVIHFLQCGPTKVLPNLQQS 667
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform a protein.
Length = 1113
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = -3
Query: 399 VNNAPKNPFVR-TLCLVIKYLLQCGPT-LTKNIIQS 298
+N+A K+ F +L L++ + LQCGPT + N+ QS
Sbjct: 709 INDANKSSFTSYSLVLMVIHFLQCGPTKVLPNLQQS 744
>U67952-1|AAB07577.2| 414|Caenorhabditis elegans Hypothetical
protein F39B3.2 protein.
Length = 414
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 335 WSKYFITRQSVLTNGFFGALFTY 403
W+ YFI S L NG+F A F +
Sbjct: 20 WALYFIQMLSHLLNGYFTAFFVF 42
>U39472-10|AAZ82853.1| 354|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 36 protein.
Length = 354
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 451 YTS*SCYSIRGNKNIKYIVHYTTTISNYIYTRLFCNY---LNIYLNKD 585
Y S Y+ + N N IV + + + IYT + LNIY+N D
Sbjct: 230 YNLKSRYNNKSNMNSSIIVSFISFVQTLIYTIYILGFFIVLNIYVNAD 277
>U20862-3|AAN65283.1| 137|Caenorhabditis elegans Hypothetical
protein W06E11.5b protein.
Length = 137
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/44 (22%), Positives = 20/44 (45%)
Frame = +1
Query: 313 LSQSWTTLEQVFYNQTECSDKWILWSIIYICTILDVHLWDGSCL 444
LS + + + V + S +W+L + + C + +W CL
Sbjct: 77 LSATLSRVNSVLKRHVQTSSRWLLCGLAFCCCSIGCSMWPVLCL 120
>U20862-2|AAK29864.1| 179|Caenorhabditis elegans Hypothetical
protein W06E11.5a protein.
Length = 179
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/44 (22%), Positives = 20/44 (45%)
Frame = +1
Query: 313 LSQSWTTLEQVFYNQTECSDKWILWSIIYICTILDVHLWDGSCL 444
LS + + + V + S +W+L + + C + +W CL
Sbjct: 77 LSATLSRVNSVLKRHVQTSSRWLLCGLAFCCCSIGCSMWPVLCL 120
>AF248541-1|AAF63761.1| 179|Caenorhabditis elegans cysteine-rich
hydrophobic protein protein.
Length = 179
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/44 (22%), Positives = 20/44 (45%)
Frame = +1
Query: 313 LSQSWTTLEQVFYNQTECSDKWILWSIIYICTILDVHLWDGSCL 444
LS + + + V + S +W+L + + C + +W CL
Sbjct: 77 LSATLSRVNSVLKRHVQTSSRWLLCGLAFCCCSIGCSMWPVLCL 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,470,458
Number of Sequences: 27780
Number of extensions: 322001
Number of successful extensions: 966
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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