Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I24
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   1.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   1.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.4  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +1

Query: 307 KWENLTL----RMQIPCPSDKHNVTKDYYLERLE 396
           +WEN+T        +PCP D H + + ++    +
Sbjct: 605 QWENVTNIQCPNADLPCPKDGHVILETFHFSEAD 638


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +1

Query: 307 KWENLTL----RMQIPCPSDKHNVTKDYYLERLE 396
           +WEN+T        +PCP D H + + ++    +
Sbjct: 605 QWENVTNIQCPNADLPCPKDGHVILETFHFSEAD 638


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 631 LFLFLICRLANIFALFCLGVRRLLYRQMALCL 536
           +FLF I  L  +  L+C+  + L+     L L
Sbjct: 242 IFLFFIIPLIILLILYCIIAKNLMSNAATLVL 273


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,402
Number of Sequences: 336
Number of extensions: 4104
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)