Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_I23
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 29 0.59
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 28 1.8
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 27 3.2
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 3.2
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 4.2
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 26 5.5
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce... 26 7.3
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 26 7.3
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 26 7.3
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 25 9.6
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra... 25 9.6
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c... 25 9.6
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po... 25 9.6
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 29.5 bits (63), Expect = 0.59
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 597 LPSEYDLRILGYVSKVKNQEDCGSCWTFGTTAAAEGALARING 725
+P +Y+LR+L ++ + G C AAEG AR NG
Sbjct: 30 VPGDYNLRLLDFLEYYPGLSEIGCCNELNCAFAAEG-YARSNG 71
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 306 NDKHVDHVFNSFKNKFVRNYADNNEHETRRNIFRKNMRLITETNRQKL 449
+ K D NS NKF +DN+E T + I ++ + E KL
Sbjct: 51 SQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKL 98
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = -3
Query: 316 CLSFSGSMNMRNLVTVSLCNVCSSTFSSSQSYWLTSKADLSNPVLKLK*SQISCFSKSPN 137
C S S S N NL T + + Q + + D NP K S+I +K P+
Sbjct: 420 CASSSSSSNSNNLSTGMSMRTLGHQYLNLQGSGVKNLHDKGNPTALSKDSEIDSSTKKPS 479
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.1 bits (57), Expect = 3.2
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +1
Query: 286 SCSWIPKMINMLITYLTVSKTNSS 357
+CSWI ++ ++ +TY+T+S ++S
Sbjct: 336 NCSWIGRIWSIKLTYMTLSGASTS 359
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 26.6 bits (56), Expect = 4.2
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Frame = +2
Query: 419 TNHGNKPSKTRLHTRGHSVCGPHSRRNAKTQGPAYTSRR---KGRKYSL-PIS*TQNTRY 586
++ N PS +H+R H N T G S + + R + L P S Y
Sbjct: 390 SSSNNSPSHNNIHSRQHPFSSDEDEGNIVTNGTGLRSSQSSSQNRGFDLEPYSEVFTASY 449
Query: 587 CRRPSLRIR 613
RR + R R
Sbjct: 450 PRRQARRTR 458
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 5.5
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 186 TGFDKSAFDVSQYDCDDENVEEHTLQSETVTKFLMFMDPENDKHVDHV-FNSFKNKFVRN 362
TGF+ +++ + DD NV++ E+V MFMD N ++ V +S K+K +
Sbjct: 1011 TGFELTSYVNALSKKDDINVQKTENVDESVGLNAMFMDNVNQDSLNSVDQSSGKDKLLLT 1070
Query: 363 YADNNEHET 389
+ N+ T
Sbjct: 1071 SSTPNKPTT 1079
>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 244 TFSSSQSYWLTSKADLSNP 188
TFS W+ ++ADLSNP
Sbjct: 210 TFSDMFHGWMAARADLSNP 228
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 744 IDSTVFLR*FEQGLLQQLQWYRMSSRIHNLLDF 646
I + F+R G L WYR + +IH DF
Sbjct: 358 IKNPTFIRCANGGTLLTSGWYRYARKIHYTADF 390
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 246 EEHTLQSETVTKFLMFMDPENDKHVDHVFNSFKNKFVRNYA-DNNEHETRRNIFR 407
E+ Q E + + DP++D+HV + + +K F+ + D E + R R
Sbjct: 70 EKQKQQRERLRSMIKVWDPDHDRHV--IGDPYKTMFLSRLSYDTKESDIEREFTR 122
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 9.6
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +1
Query: 526 VPKERSEIFPSHILNTKYEILPKTFPQNTI*ESWATFLKSKIKKIVDPAGHSVPLQLLKE 705
V E SE + H+LN K+E + T E FL ++ + P + L+ L+
Sbjct: 172 VCSECSEKYRDHLLNQKHESIAGT-------ERAPLFLSENFRENLCPCESCISLRNLEM 224
Query: 706 PLLESTE 726
P+L + E
Sbjct: 225 PMLVAEE 231
>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
translocase complex subunit Tim21 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 635 NVAQDSQIVF*GKVFGNISY-FVFRIWEG 552
N+ S ++F G VFG I Y V IW+G
Sbjct: 69 NIGNFSIVIFGGGVFGLIIYALVTSIWKG 97
>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
2|||Manual
Length = 221
Score = 25.4 bits (53), Expect = 9.6
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 676 VQQDPQSS*FLTLET*PKILKSYSEGRSSAISRILCSGYGKGIFPTFP 533
VQ+D S L L PKI S +E S ++ +G KG+ P P
Sbjct: 148 VQKDSTS---LMLNKIPKIFSSITEAMSLNPGDLVLTGTPKGVGPVVP 192
>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 295 WIPKMINMLITYLTVSKTNSSETTLI 372
WI N L+ YL ++K++S TLI
Sbjct: 119 WIRDSANQLLPYLPLAKSDSPLATLI 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,367,257
Number of Sequences: 5004
Number of extensions: 73086
Number of successful extensions: 259
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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