Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I23
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   1.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   1.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.5  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   4.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   4.4  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 619 LKSYSEGRSSAISRILCSGYGK 554
           L+ YS     A+S +LC GYG+
Sbjct: 323 LEQYSWALFKAMSHMLCIGYGR 344


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 619 LKSYSEGRSSAISRILCSGYGK 554
           L+ YS     A+S +LC GYG+
Sbjct: 291 LEQYSWALFKAMSHMLCIGYGR 312


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 57  KTIWATYDEKNNNWHPVRYEVKNYN 131
           KTI    +  NNN++   Y   NYN
Sbjct: 88  KTIHNNNNYNNNNYNNYNYNNNNYN 112


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = -2

Query: 671 AGSTIFLIFDFRNVAQDSQIVF*GKVFGNISYFVFRIWEGNIS 543
           AG T     D+    +         ++GNIS+F+    + N++
Sbjct: 545 AGRTYLFDLDYNESEEQCPYTVDAAIYGNISHFINHSCDPNLA 587


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 402 FRKNMRLITETNRQKLGYTLGVTQ 473
           F +N R +TE  RQ+L   LG+T+
Sbjct: 39  FAEN-RYLTERRRQQLSRDLGLTE 61


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +3

Query: 174 FNFNTGFDKSAFDVSQYDCDDENVEEHTLQSET 272
           F    GFD    D   Y C+D    +  L  ET
Sbjct: 211 FWLRRGFDGFRVDALPYICEDMRFLDEPLSGET 243


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 75  YDEKNNNWHPVRYEVKNYNE 134
           YD K++   P  Y   NYNE
Sbjct: 530 YDSKSSTETPPSYNQLNYNE 549


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +3

Query: 174 FNFNTGFDKSAFDVSQYDCDDENVEEHTLQSET 272
           F    GFD    D   Y C+D    +  L  ET
Sbjct: 211 FWLRRGFDGFRVDALPYICEDMRFLDEPLSGET 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,171
Number of Sequences: 438
Number of extensions: 5173
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)