Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_I21
(813 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 30 0.45
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 28 1.4
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 28 1.8
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 27 2.4
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 3.2
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 4.2
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 27 4.2
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 26 5.5
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 5.5
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|... 26 5.5
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 26 7.3
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 7.3
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 26 7.3
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 26 7.3
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 9.7
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 25 9.7
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 25 9.7
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 9.7
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 9.7
SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar... 25 9.7
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 9.7
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 9.7
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 29.9 bits (64), Expect = 0.45
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +1
Query: 472 SRRPTDKAGEPIDILSSDEDGSAAPKLPKINDQITITPHIPARTNSTAIESALK-QQNQP 648
S RPT A P+D+ S + SA P + T + +T++ AL+ Q
Sbjct: 593 SSRPTPNASSPLDVRSKQKPSSANSNAPTPAPTVNTTNPESSTNEATSVGPALEPSQGAN 652
Query: 649 LDKKRKLDSNKSGAPKKKHETGS 717
+ K N++ + K +T +
Sbjct: 653 VHKSDSELDNQNQSGKSNPDTSA 675
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -3
Query: 481 GADSQPDVFYLAFCTWPIYVRLTHWCFRLTILNLTL--PPTHLMWTLRRGRNSVVQ 320
G D QP F WP Y+RL R ILNL L PP + +N+ Q
Sbjct: 37 GQDIQPKRDLSRFVKWPEYIRLQR---RRKILNLRLKVPPAIAQFQKTLDKNTATQ 89
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 508 DILSSDEDGSAAPKLPKINDQITITPHIPARTNSTAIESALKQQNQPL--DKKRKLDSNK 681
D + + + +A+ ++ +T +P ++TN+T + +A +N L DK++ +++
Sbjct: 694 DFMKASVERAASSRVFSTGTSVT-SPQALSKTNNT-VNNAANTENNTLAKDKQQTSEASS 751
Query: 682 SGAPKKKHETG 714
G P++ TG
Sbjct: 752 PGTPRELKTTG 762
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 685 GAPKKKHETGSAKMVKIGFEDIGGLSDIITXICDLI-LHMKHPE 813
G P + + S+ + ++G++DIGG + I +L+ L ++HP+
Sbjct: 206 GEPINREDEESS-LAEVGYDDIGGCRRQMAQIRELVELPLRHPQ 248
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.1 bits (57), Expect = 3.2
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Frame = +1
Query: 430 LAMYKMQDKKRPAAS----RRPTDK---AGEPIDILSSDEDGSAAPKLPKINDQITITPH 588
L ++K DK+R A +P ++ E D + D A ++ DQ +
Sbjct: 1389 LVLFKKLDKERAATDIYGKGKPLERLLTVNELPDFYKVEVDSFAVQSSSELEDQY-LERK 1447
Query: 589 IPARTNSTAIESALKQQNQPLDKKRKLDSNKSGAPKKKHETGSA 720
R + + E L + N D L K G P+KK +GS+
Sbjct: 1448 RRRRNSISYTELTLDELNTVDDPSSTLMPRKRGRPRKKTNSGSS 1491
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 554 GNLGAALPSSSLLKMSIGS 498
GNL A P S LLK+++GS
Sbjct: 201 GNLNARRPQSGLLKITVGS 219
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/30 (30%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 727 VKIGFEDIGGLSDIITXIC-DLILHMKHPE 813
+ + F+DIGG+ + + + D++ +K+PE
Sbjct: 84 IDVSFDDIGGMDEHVNQLLQDVLFPLKYPE 113
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 26.2 bits (55), Expect = 5.5
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 598 RTNSTAIESALKQQNQPLDKKRKLDSNKSGAPKKKH-ETGSAKMVKIGFEDIGGLSDIIT 774
R NST +SA K NQP++K +K A +K++ E G+ + K + LSD T
Sbjct: 166 RGNSTINKSAQKLNNQPIEKS---SVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDEET 222
Query: 775 XICDLI 792
DL+
Sbjct: 223 NEDDLL 228
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 5.5
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Frame = +1
Query: 484 TDKAGEPIDILSSDE--DGSAAPKLPKI----NDQITITPHIPARTNSTAIESALKQQNQ 645
T EPID + ++ D S P P N+ + +P A T+ + S +Q
Sbjct: 336 TQTVEEPIDTKAGEKLTDSSKQPSPPVAEHFSNETFSASPK-GAETDVKSEGSNNHEQGS 394
Query: 646 PLDKKRKLDSNKSGAPKKKHETGSAK 723
+ K +DSN S +PK+ S +
Sbjct: 395 FNEPKSNVDSNDSASPKRPSSQASLR 420
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 5.5
Identities = 20/90 (22%), Positives = 39/90 (43%)
Frame = +1
Query: 442 KMQDKKRPAASRRPTDKAGEPIDILSSDEDGSAAPKLPKINDQITITPHIPARTNSTAIE 621
K + + A+ + D + +D LS DE+ S + + K + + + S A++
Sbjct: 112 KNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEKSKKKKKKSKSKD----DGSEALD 167
Query: 622 SALKQQNQPLDKKRKLDSNKSGAPKKKHET 711
+ ++ KK+K APKK +T
Sbjct: 168 DGDIESSEKDKKKKKKSKENDDAPKKDRKT 197
>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 658 KRKLDSNKSGAPKKKH 705
K+KLDS KSG +KKH
Sbjct: 10 KKKLDSAKSGRVEKKH 25
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 679 KSGAPKKKHETGSAKMVKIGFEDIGGLSDIITXICDLILHMKHPE 813
KS A HET +KI F D+ G+ + I + + +K+P+
Sbjct: 279 KSRAKMFNHETD----IKIKFADVAGVDEAKEEIMEFVKFLKNPK 319
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 7.3
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Frame = +2
Query: 503 LSTS*AAMKTAV-----RLPNYLKLTTK*LSHHISQPELTARRLRVHSNNKTNHLIKNVS 667
LSTS A +T++ LPNY + HH Q + N + NH +NV
Sbjct: 260 LSTSPEAHRTSIYSYSANLPNYYNEHNELHEHHNPQTPSSPESAYSPENLQLNHEAQNVE 319
Query: 668 LTAIKVEHRRKNMRLDQQK 724
+ M L+ ++
Sbjct: 320 YLGNNAAEKSLQMNLEDEQ 338
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.8 bits (54), Expect = 7.3
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +1
Query: 454 KKRPAASRRPTDKAGEPIDILSSDEDGSAAPKLPK---INDQITITPHIPARTNSTAI 618
KKR S PT + P++I + D L K ND+ + P AR + T++
Sbjct: 671 KKRVRFSEVPTTSSVPPVEIKNKDSKPKVEKSLDKHNMNNDRSFLVPSRDARNSLTSL 728
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 709 TGSAKMVKIGFEDIGGLSDIITXICDLI 792
+G+ ++V + E + G D I ICDL+
Sbjct: 602 SGACELVHLASEGLDGELDFINVICDLL 629
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 169 VSRVKNYLAEN---VDKTFVDVSQMARSLKERYREYNNRSDTAFCQMVEAAYKVVLQ 330
+S + YL N ++ T DV Q+ +K+ ++ N ++ EAA KVVL+
Sbjct: 257 LSYLLQYLEGNRSKINATDADVKQLLSDVKKNKSKWANDQRIGQEELYEAAEKVVLE 313
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 658 KRKLDSNKSGAPKKK 702
KRK DSNK G KKK
Sbjct: 365 KRKRDSNKGGESKKK 379
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 292 RRQCRSYCYTRGTALSENAPFD*HRQT-FCPHFRPNNFLHVTL 167
R R++CY ++E P + R+T + F P+ LH L
Sbjct: 324 RNVARAWCYETSICVNEQIPSELPRETLYYEFFAPDYTLHPRL 366
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 628 LKQQNQPLDKKRKLDSNKSGAPKKKHETGSAKMVKI 735
L+ +Q +KLD N S A KK H+ K+ +
Sbjct: 701 LQVPDQRTSSAKKLDKNSSKADKKNHKLKMDKVASL 736
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 9.7
Identities = 28/99 (28%), Positives = 40/99 (40%)
Frame = +1
Query: 427 ILAMYKMQDKKRPAASRRPTDKAGEPIDILSSDEDGSAAPKLPKINDQITITPHIPARTN 606
+LA P+ + + G P LSS+++ S +P + ND + TN
Sbjct: 77 LLATMPSVASSNPSLISSGSSQTGSPSQSLSSNKEPS-SPGISPSNDSQS------QNTN 129
Query: 607 STAIESALKQQNQPLDKKRKLDSNKSGAPKKKHETGSAK 723
T+I SA N P R DS S HE S+K
Sbjct: 130 HTSI-SANPYVNNPSHTSRNPDSG-SSLNTASHEVPSSK 166
>SPAC1296.02 |cox4||cytochrome c oxidase subunit
IV|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 85 LQTILRRNLLEMKKTHNTRQKTLNDPVIVSRVKNY 189
L + R+ +MK +R+ TL DP++V+ + Y
Sbjct: 81 LSELSGRDAFDMKPLDASRKGTLTDPIMVTSLDPY 115
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 616 IESALKQQNQPLDKKRKLDSNKSGAPKKKHETGS 717
++ AL ++ L+K K SNK+G K+KH + S
Sbjct: 171 LDLALSEKTHSLNKASK-KSNKNGDKKRKHVSKS 203
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 646 PLDKKRKLDSNKSGAPKKKHETGSAKMVKIGFEDIGGLSDIITXICD-LILHMKHPE 813
P+ ++ +D + + K+K T + K+ ++DIGGL + T + D L L ++ PE
Sbjct: 624 PIITEQDVDVSINRIRKEKSNT-IFTVPKVNWDDIGGLEEAKTVLRDTLQLPLQFPE 679
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.130 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,235
Number of Sequences: 5004
Number of extensions: 63387
Number of successful extensions: 244
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -