Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_I21
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0886 - 6970112-6970225,6970357-6970473,6970567-6970635,697... 33 0.20
08_02_0657 - 19749835-19751942,19753123-19753561 32 0.62
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 29 3.3
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 29 4.4
03_05_0042 + 20180151-20180468,20181595-20181665,20182929-201830... 29 4.4
04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990... 29 5.8
03_03_0048 + 14065317-14065433,14065646-14065726,14066566-140669... 29 5.8
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188... 28 7.7
01_07_0036 + 40647046-40647100,40647120-40647571,40648135-406482... 28 7.7
>01_01_0886 -
6970112-6970225,6970357-6970473,6970567-6970635,
6970711-6970849,6970964-6971532,6971799-6971966,
6972097-6972184,6972260-6972818,6972924-6973024,
6973113-6973155,6973845-6973938,6974160-6974215,
6974460-6974581,6975306-6975517
Length = 816
Score = 33.5 bits (73), Expect = 0.20
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 1/123 (0%)
Frame = +1
Query: 448 QDKKRPAASRRPTDKAGEPIDILSSDEDGSAAPKLPKINDQITITPHIPARTNSTAIESA 627
+D + A R + A I ++ + A LP + P + ++ E
Sbjct: 412 KDSMKLEAKRDASKVADRGIAPFAAKSETKPATLLPPVPPTAAAAPPVESKAEPEKFEK- 470
Query: 628 LKQQNQPLDKKRKLDSNKSGAPKKKHETGSAKMVKIGFEDIGGLSDIITXICDLI-LHMK 804
K P K ++ + + + E A + + F+DIG LSDI + +L+ L ++
Sbjct: 471 -KDNPSPAAKAPEMPPDNEFEKRIRPEVIPANEIGVTFDDIGALSDIKESLQELVMLPLR 529
Query: 805 HPE 813
P+
Sbjct: 530 RPD 532
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 31.9 bits (69), Expect = 0.62
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 691 PKKKHETGSAKMVKIGFEDIGGLSDIITXICDLILH-MKHPE 813
P ETG ++ K+ ++DIGGL ++ + + + + ++HPE
Sbjct: 472 PSALRETGIVEVPKVSWDDIGGLGEVKRELQETVQYPVEHPE 513
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 708 LMFFLRCSTFIAVKLTFFIKWLVLLFECTLNRRAVSS 598
L F + C + ++ FF W V++ CT++ A S
Sbjct: 424 LQFLVCCCCYGHIQFVFFSSWFVVVMACTMSSMACHS 460
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 592 PARTNSTAIESALKQQNQPLDKKRKLDSNKSGAPKKKHETGSAKMVK 732
P+ N A+ + K+Q++ + K+R K PK+ + +AK+ K
Sbjct: 431 PSTQNEVAVRLSKKEQDRKIMKQRDKGKKKEALPKEDKDQVAAKVQK 477
>03_05_0042 +
20180151-20180468,20181595-20181665,20182929-20183087,
20183598-20183664,20183913-20184008,20184687-20184733,
20185113-20185193,20185704-20185806,20185967-20186028,
20187188-20187302,20193191-20195087,20195206-20195492
Length = 1100
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +1
Query: 607 STAIESALKQQNQPL---DKKRKLDSNKSGAPKKKHETGSAKMVKIGFE-DIGGLSDIIT 774
+ A+ A K + PL +KRK+D +PK+ K V++ FE IG +S I
Sbjct: 547 AAAVVKARKMKELPLLLSPRKRKIDVPPDVSPKRVGNGAKEKAVELSFEAPIGSVSTINE 606
Query: 775 XIC 783
C
Sbjct: 607 LSC 609
>04_04_1163 -
31398565-31398654,31398729-31398812,31398893-31399037,
31399118-31399239,31399338-31399376,31399491-31399601,
31399682-31399804,31399946-31400032,31400136-31400207,
31400349-31400621,31400704-31400895,31400988-31401171,
31401339-31401480,31401578-31401821,31401959-31402603,
31403024-31403293
Length = 940
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 622 SALKQQNQPLDKKRKLDSNKSGAPKKKHETGSAKMVKIGFEDIGGLSDIITXICDLI 792
S+ + + + K+ L S + + + G+ K+ + +ED+GGL ++ I D I
Sbjct: 617 SSSQNEEKTFCKEYILSSLERAKKRNRAALGTPKVPNVKWEDVGGLEEVKKVILDTI 673
>03_03_0048 +
14065317-14065433,14065646-14065726,14066566-14066967,
14067131-14067199,14067278-14067360,14067503-14067555,
14067659-14067780,14068033-14068386,14068479-14068578,
14068663-14068895
Length = 537
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +1
Query: 160 PVIVSRVKNYLAENVDKTFVDVSQMARSLKERYREYNNRSDTAFCQMVEAAYKVVLQS 333
P + ++ + + +N + + R L+E Y+E+NN + ++ ++E Y + L S
Sbjct: 423 PTMADQLSSQVDQNSVQVNAKLEATKRMLQEGYQEFNNDTKSSTSALIETYYFLNLDS 480
>02_01_0282 +
1882844-1883413,1883519-1883644,1883733-1883930,
1884442-1884666,1884844-1885224,1885282-1885989,
1886546-1886839,1887211-1887709,1887949-1888721
Length = 1257
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +1
Query: 466 AASRRPTDKAGEPIDILSSDEDGSAAPKLPKINDQITITPHIPARTNSTAIESALKQQNQ 645
A +RP EP +++E+ +AA P PA+ A+E K+Q +
Sbjct: 2 AGKKRPPTALSEPEAAAAAEEEEAAAKTAP--------AAEAPAKKKKLAMER--KKQRK 51
Query: 646 PLDKKRKLDSNKSGAPKKK 702
+DK+R S +S A K
Sbjct: 52 EIDKERHRQSAESDAAAAK 70
>01_07_0036 +
40647046-40647100,40647120-40647571,40648135-40648257,
40648407-40648461,40648613-40648722,40649352-40649531,
40650003-40650101,40651182-40651280,40652195-40652289,
40652290-40652378,40652739-40652901,40653299-40653404,
40655647-40655829,40656059-40656286,40656373-40656486
Length = 716
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 764 SERPPISS-KPILTIFADPVSCFFFGAP 684
SER P S KP+ I A+PVSC F P
Sbjct: 109 SERKPSSEGKPMPAIAAEPVSCAGFARP 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.130 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,621,037
Number of Sequences: 37544
Number of extensions: 402552
Number of successful extensions: 1293
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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