Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I18
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   2.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   5.5  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -3

Query: 170 SVKYNTYN*NITKKKQTPYKKQLLNKHTFISYVDTSTNVPHY 45
           S  YN YN N  K     Y K+L  K+  I+       VP Y
Sbjct: 319 SNNYN-YNNNNYKYNYNNYNKKLYYKNYIINIEQIPVPVPVY 359


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 12/42 (28%), Positives = 15/42 (35%)
 Frame = -3

Query: 170 SVKYNTYN*NITKKKQTPYKKQLLNKHTFISYVDTSTNVPHY 45
           S  YN  N N        Y K+L     +I  +     VP Y
Sbjct: 86  SNNYNYSNYNNYNNNYNNYNKKLYYNINYIEQIPVPVPVPVY 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,151
Number of Sequences: 438
Number of extensions: 636
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)