Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I17
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    30   0.47 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    30   0.47 
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    28   1.9  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   1.9  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   5.8  

>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 585 KLCIVAEYSVSQFPTVPD-RFPETTLYNLPSLFQMAITVAIF 463
           K+C++    +S    +PD R PET +YN    F +    A+F
Sbjct: 29  KICVMVGAGISTAAGIPDFRSPETGIYNNLQRFNLPYAEAVF 70


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +1

Query: 442  NQSLYPFEDSNGDCHLKKRWEVIESSLWKPIRDSRELANTILSYNTKFKKIW-KFKALHK 618
            N  LYP E ++   +L+K  E ++ +L   +++   L + I SYN +  K+  K K L +
Sbjct: 911  NGYLYPSEHTSKIEYLEKTIEDLKLALQDELKNRNLLMDDISSYNKQTTKLQEKIKWLER 970

Query: 619  LFSEYLDEEET 651
              S  +DE E+
Sbjct: 971  ERSILIDELES 981


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 465 FKWIKALI*TRHPYKLMIPLITSYLWFWRSVSIN 364
           F W K     ++PYKL I    SYL  + +V++N
Sbjct: 3   FLWAKEFCVLKYPYKLFITHKFSYLLRFETVTLN 36


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 833 CIPSXKVQKKAFARILXICCXDNDIE*FLCCFSSGMG 723
           C  + KVQ   F     +CC D D+   L C + G G
Sbjct: 247 CRYTQKVQSSEFQSKCTVCCYDKDLWICLICGNIGCG 283


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +1

Query: 517 SLWKPIRDSRELANTILSYNTKFKKIWKFKALHKLFSEYLDEEETQYFFDV 669
           +L+KP+   ++LA+ + +   K++ +  F  +  L  ++LD     YF DV
Sbjct: 29  ALFKPVYKGKKLADPVPTIEDKWQLLPAFLKVKGLVKQHLD--SYNYFVDV 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,388,445
Number of Sequences: 5004
Number of extensions: 71455
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)