Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I17
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0379 + 2946605-2946684,2946798-2946944,2947420-2947488,294...    30   2.0  
01_01_0524 - 3845637-3845727,3845803-3845896,3846415-3846497,384...    30   2.7  
08_02_0312 + 15650594-15650652,15650725-15650811,15651016-156511...    28   8.1  

>03_01_0379 +
           2946605-2946684,2946798-2946944,2947420-2947488,
           2947608-2947773,2947889-2948117,2948206-2948645,
           2949155-2949702,2949739-2949760
          Length = 566

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 184 TLSKKVIKLCTTMSTVTKNWLGVPISEIRGSQSPWGAPEFP 306
           T+  KV+  C  +++V   WLG+P   + G  +  G  E+P
Sbjct: 150 TIRAKVLIGCDGVNSVVAKWLGLPKPILSGRSATRGLAEYP 190


>01_01_0524 -
           3845637-3845727,3845803-3845896,3846415-3846497,
           3846587-3846737,3847113-3847217,3847351-3847420,
           3847551-3847587,3848155-3848257,3848441-3848480
          Length = 257

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 539 TVGNWLTLYSATIQSLRKYGNSKPY-TNCSVNI 634
           ++G    LYSAT  +  KYGN  PY  N SV++
Sbjct: 127 SMGAATALYSATCYAHGKYGNGNPYPVNLSVSV 159


>08_02_0312 +
           15650594-15650652,15650725-15650811,15651016-15651142,
           15651533-15651712,15652071-15652231,15652338-15652450,
           15652648-15652722,15652823-15652936,15653177-15653244,
           15653336-15653419,15653545-15653598,15653844-15653937,
           15654093-15654166,15654248-15654358,15654443-15654487,
           15654572-15654628,15654711-15654815,15654889-15655005,
           15655301-15655404,15655876-15656041,15656149-15656286
          Length = 710

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 250 VPISEIRGSQSPWGAPEFPLVVPAYNHSVLYHVQN 354
           VP++E+    SPW A  F  + P     +L H ++
Sbjct: 440 VPVAEMPSQLSPWAAALFQFLPPFIRRELLLHQES 474


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,100,402
Number of Sequences: 37544
Number of extensions: 408314
Number of successful extensions: 908
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)