Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I17
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.2  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   8.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   8.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   8.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 484  GNHRCYLQMDKGSDLNTASLQTHDPTY 404
            G + CY++   G D  T  L  H P +
Sbjct: 1342 GEYSCYVENTFGHDTVTHQLIVHAPPH 1368


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 320 HTIIPFCITCRTVDRLM 370
           + I+PFC  C   DR++
Sbjct: 347 YVIVPFCPDCCPSDRMV 363


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 320 HTIIPFCITCRTVDRLM 370
           + I+PFC  C   DR++
Sbjct: 347 YVIVPFCPDCCPSDRMV 363


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 320 HTIIPFCITCRTVDRLM 370
           + I+PFC  C   DR++
Sbjct: 347 YVIVPFCPDCCPSDRMV 363


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 840  SFLYSVXESTEKSIRKDTXYLL 775
            SFLY   ES+    +K T YLL
Sbjct: 961  SFLYKSSESSCNPDQKPTEYLL 982


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,074
Number of Sequences: 438
Number of extensions: 5055
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)