Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_I11
(913 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 32 0.098
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 29 1.2
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 28 2.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 2.1
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 27 2.8
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 27 3.7
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 27 4.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.5
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 8.5
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 8.5
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 32.3 bits (70), Expect = 0.098
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = +1
Query: 373 SRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTP--EEIVVKTVDNKLLVHAKHEE 546
SRQ++ + W +++ L D +L +++ S P E + K L AK
Sbjct: 235 SRQVSAHNFWPKISASLGFPSPDAISLLIQYYNSYLLPYEEAWLAAQQQQKSLQQAKANH 294
Query: 547 KSDTKSVYREYNREFLLPKGTNPEAIKSSLSRDGVLTVEAPLP 675
++ +S + Y ++ P T PEA+ ++ S G L ++P P
Sbjct: 295 SANVQSRPKNYPQK---PVQTTPEAVHANGSMHGSLHSKSPSP 334
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -3
Query: 629 DLMASGFVPLGNKNSLLYSLYTDFVSDFSSCLAWTSNLLSTVLTTISSG 483
+L + G P+G+ +S++ +L TDF +++ + + S LS T +S G
Sbjct: 327 ELHSLGDTPVGDNSSIVLNLITDFCNEYRTVVDGRSEELSA--TELSGG 373
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 199 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 288
G F+ +D+E IRE +AE++KMEE+ K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 320 TISSRAQLARRHLHSTVTADSLLSPVTGI-A*TRRSFKTRVTARLSSFALMSASILPKRS 496
T +S + ++ST + +P++ + + T S + ++S SAS P S
Sbjct: 432 TATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTS 491
Query: 497 LLRLSTTNYWSTPNTRRNLIRNLCTENTTGSF 592
+ S T+ STP T N + +T S+
Sbjct: 492 VNSTSATSASSTPLTSANSTTSTSVSSTAPSY 523
Score = 27.1 bits (57), Expect = 3.7
Identities = 24/77 (31%), Positives = 36/77 (46%)
Frame = +2
Query: 362 STVTADSLLSPVTGIA*TRRSFKTRVTARLSSFALMSASILPKRSLLRLSTTNYWSTPNT 541
+T T+ + LS V T S T +T+ ++S SAS P S+ S T+ STP T
Sbjct: 335 ATSTSSTPLSSVNSTTATSAS-STPLTS-VNSTTATSASSTPLTSVNSTSATSASSTPLT 392
Query: 542 RRNLIRNLCTENTTGSF 592
N + +T S+
Sbjct: 393 SANSTTSTSVSSTAPSY 409
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 27.5 bits (58), Expect = 2.8
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Frame = +1
Query: 397 HWDSLNSPLIQDEG---DGKTLKLRFDVSQYTPEEI-----VVKTVDNKLLVHAKHEEKS 552
+++S P+ DEG D + + RF + + I ++ V + + + H ++S
Sbjct: 305 NFNSYIKPVAGDEGRVEDEEFEENRFSIEDIEIDSIPAVRRLLGDVMSDIPYYMSHHKES 364
Query: 553 DTKSVYREYNREFLLPKGTNP 615
KSV RE NR + L K NP
Sbjct: 365 IIKSVIREANRVYHLWKDCNP 385
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 27.1 bits (57), Expect = 3.7
Identities = 23/83 (27%), Positives = 39/83 (46%)
Frame = +1
Query: 466 DVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSRD 645
D S T EE+V + D K L K+D +S + E ++ ++ + +P ++ SLS D
Sbjct: 109 DHSSDTEEEVVSE--DQKQL------NKTDDESTFIESHQIYIQGETKSPSSVSQSLSGD 160
Query: 646 GVLTVEAPLPQLAITDRNIPIQK 714
L + + N PI+K
Sbjct: 161 PSLKPAEVFDRKQSAEINSPIEK 183
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 4.9
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 523 LVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSRDGVLTVEA-PLPQL 681
L H HE D +S+YR R L + E + S S + +LTV + P P L
Sbjct: 49 LAHKVHE---DVESIYRRLERLQLCKRNEEEEMLNSDAS-EAMLTVSSVPSPTL 98
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 6.5
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Frame = -3
Query: 695 LSVMASCGKGASTVSTPSR-----DSEDLMASGFVPLGNKN----SLLYSLYTDFVSDFS 543
+S +S ST+ST S S L S +P + + S++ S T +S S
Sbjct: 484 ISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSS 543
Query: 542 SCLAWTSNLLSTVLTTISSGV 480
S +S+ S+ +TTISSG+
Sbjct: 544 SIPTSSSSDFSSSITTISSGI 564
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 495 DLFGSILADIKAKLESLAVTLVLNERRV*AIPVTGLSKLSAVTVL*RC 352
D G I+ + K K + V LN+ R+ + TG + L+++ V RC
Sbjct: 843 DFCGFIVFENKLKSTTATVIRELNDARIRTVMCTGDNVLTSICVGKRC 890
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 8.5
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 469 VSQYTPEEIVVKTVDNKLLVHAKHEEKS-DTKSVYREYNREFLLPKGTNPEAIKSSL 636
V TP + V DNK LV K EK + +S E +E K T PE + +L
Sbjct: 1347 VPDSTPSDAVASETDNKNLVENKAVEKRVEARSSANERKQEERRRK-TTPEGNRRAL 1402
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,323,349
Number of Sequences: 5004
Number of extensions: 66644
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -