Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I10
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50198-3|AAA91261.2|  503|Caenorhabditis elegans Hypothetical pr...    30   1.7  
X74838-1|CAA52832.1|  231|Caenorhabditis elegans cuticlin 2 prot...    28   7.0  
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    28   7.0  
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    28   7.0  
AC006630-5|AAK68323.1|  335|Caenorhabditis elegans Collagen prot...    27   9.3  

>U50198-3|AAA91261.2|  503|Caenorhabditis elegans Hypothetical
           protein R04B3.3 protein.
          Length = 503

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 275 WSPGYGGYASDAHYGAPAAGLYKYGPAP 358
           +SPGYGGY     Y  PAA  + YGP P
Sbjct: 27  YSPGYGGY-----YAPPAAS-FNYGPFP 48


>X74838-1|CAA52832.1|  231|Caenorhabditis elegans cuticlin 2
           protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 269 GAWSPGYGGYASDAHYG--APAAGLYKYGPA 355
           G  +P  G Y S   +G  APA G Y+ GPA
Sbjct: 135 GGAAPAGGAYQSGPAFGGAAPAGGAYQSGPA 165


>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
            protein.
          Length = 1492

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +2

Query: 308  AHYGAPAAGLYKYGPAPLAH 367
            A YGAP      YGPAP AH
Sbjct: 1049 ASYGAPTPPQASYGPAPGAH 1068


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
            protein Y53H1C.2a protein.
          Length = 1512

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +2

Query: 308  AHYGAPAAGLYKYGPAPLAH 367
            A YGAP      YGPAP AH
Sbjct: 1069 ASYGAPTPPQASYGPAPGAH 1088


>AC006630-5|AAK68323.1|  335|Caenorhabditis elegans Collagen protein
           165 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = +2

Query: 269 GAWSP--GYGGYASDAHYGAPAAGLYKYGPAPLAHDG 373
           G W P  G GG A    YGAPA       PAP    G
Sbjct: 82  GQWIPDSGAGGGAGKEDYGAPATEQPYNAPAPSPSHG 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,617,402
Number of Sequences: 27780
Number of extensions: 141648
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)