Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I08
         (544 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3SDA4 Cluster: Mini antigen; n=1; Paramecium tetraurel...    36   0.80 
UniRef50_Q23H35 Cluster: TRAF-type zinc finger family protein; n...    35   1.1  
UniRef50_Q4VR27 Cluster: PTet01; n=9; Campylobacter|Rep: PTet01 ...    33   5.6  
UniRef50_UPI0000E4A177 Cluster: PREDICTED: similar to AT motif b...    32   7.4  
UniRef50_Q1N1D4 Cluster: Efflux transporter, RND family, MFP sub...    32   7.4  
UniRef50_A1B9N7 Cluster: ABC transporter related; n=4; Rhodobact...    32   7.4  
UniRef50_A0BIR1 Cluster: Chromosome undetermined scaffold_11, wh...    32   7.4  
UniRef50_A0Q3S6 Cluster: Putative uncharacterized protein; n=2; ...    32   9.8  

>UniRef50_Q3SDA4 Cluster: Mini antigen; n=1; Paramecium
           tetraurelia|Rep: Mini antigen - Paramecium tetraurelia
          Length = 1456

 Score = 35.5 bits (78), Expect = 0.80
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = +3

Query: 69  FWKLQQQRAQLFHSCYLMT--CSISCL 143
           FW LQQQ  Q+F+SCY +T   S++CL
Sbjct: 314 FWSLQQQNCQVFYSCYQITGLNSLACL 340


>UniRef50_Q23H35 Cluster: TRAF-type zinc finger family protein; n=1;
           Tetrahymena thermophila SB210|Rep: TRAF-type zinc finger
           family protein - Tetrahymena thermophila SB210
          Length = 441

 Score = 35.1 bits (77), Expect = 1.1
 Identities = 27/79 (34%), Positives = 42/79 (53%)
 Frame = -2

Query: 453 IIFYQYFLTSSLYTSICDLVLTFAAAHVS*IKLQSASQYTFNHLSDILFLTLKPIMSQLA 274
           II  Q FL   L+    +L +TF   H+   +LQ +S   FN+  D+LFLT    +  +A
Sbjct: 42  IIREQVFLLHQLF----NLRITFLFFHLQ-TRLQLSSN--FNNKEDLLFLTANTSIFTMA 94

Query: 273 EILTIQKNLEENFTRKMGE 217
           E+    ++LE+N  + M E
Sbjct: 95  EVQERPESLEQNNLKNMQE 113


>UniRef50_Q4VR27 Cluster: PTet01; n=9; Campylobacter|Rep: PTet01 -
            Campylobacter jejuni
          Length = 1932

 Score = 32.7 bits (71), Expect = 5.6
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 357  LQSASQYTFNHLSDILFLTLKPIMSQLAEILTIQKNLEENFTRKMG 220
            L S +QY       + FLT  PI + + E+ T+Q+ ++ N  ++ G
Sbjct: 1220 LYSKTQYIHEQNKKLYFLTGTPISNSITELYTLQRYIQPNILKEKG 1265


>UniRef50_UPI0000E4A177 Cluster: PREDICTED: similar to AT motif
           binding factor 1; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to AT motif binding
           factor 1 - Strongylocentrotus purpuratus
          Length = 3296

 Score = 32.3 bits (70), Expect = 7.4
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 45  THMRCH*SFWKLQQQRAQLFHSCYLMTCSISCLDNYDSILGPAGSHSEVPQTES 206
           T  +C   F  LQ     + HSC + TC  S  ++ D +L  +G+ SE+   E+
Sbjct: 123 TCSKCSNKFTDLQ---TYMEHSCIMTTCETSLAEDDDRLLSVSGNESELSDAEN 173


>UniRef50_Q1N1D4 Cluster: Efflux transporter, RND family, MFP
           subunit subfamily protein; n=1; Oceanobacter sp.
           RED65|Rep: Efflux transporter, RND family, MFP subunit
           subfamily protein - Oceanobacter sp. RED65
          Length = 384

 Score = 32.3 bits (70), Expect = 7.4
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -2

Query: 390 TFAAAHVS*IKLQSASQYTFNHLSDILFLTLKPIMSQLAEILTIQKN 250
           T+  A +S I L++A++  +N LSD   +T+K      A++  ++KN
Sbjct: 289 TYVNAEISGITLKNAARVPYNWLSDEKLITIKDESISFADVSIVRKN 335


>UniRef50_A1B9N7 Cluster: ABC transporter related; n=4;
           Rhodobacteraceae|Rep: ABC transporter related -
           Paracoccus denitrificans (strain Pd 1222)
          Length = 249

 Score = 32.3 bits (70), Expect = 7.4
 Identities = 12/22 (54%), Positives = 19/22 (86%)
 Frame = +3

Query: 348 RFAALFMTHELLQTLVLNHKYL 413
           RFAALF+TH+LL+ + ++H+ L
Sbjct: 175 RFAALFITHDLLEAIRISHRIL 196


>UniRef50_A0BIR1 Cluster: Chromosome undetermined scaffold_11, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_11,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 518

 Score = 32.3 bits (70), Expect = 7.4
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = -2

Query: 363 IKLQSASQYTFNHLSDILFLTLKPIMSQLAEILTIQKNLEENFTRK-MGELETQIQSAGL 187
           +K     QYT+++   ++FLT KPI  Q+ EIL  Q   + N  +K M E+ +Q +   +
Sbjct: 216 LKQLKNKQYTYDYDGQVVFLTTKPIDLQINEIL--QPETKTNQPQKVMREVNSQPEIKPV 273

Query: 186 RNA 178
           + A
Sbjct: 274 KEA 276


>UniRef50_A0Q3S6 Cluster: Putative uncharacterized protein; n=2;
           Clostridia|Rep: Putative uncharacterized protein -
           Clostridium novyi (strain NT)
          Length = 179

 Score = 31.9 bits (69), Expect = 9.8
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -2

Query: 327 HLSDILFLTLKPIMSQLAEILTIQK-NLEENFTRKMGELETQIQSA 193
           + +DI+ +  K  + +L+   T+ + N+EE FTRK G++   I+ A
Sbjct: 71  YFNDIVTIERKGSLEELSNNFTVGRANIEEEFTRKKGKMYLMIEDA 116


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 461,482,631
Number of Sequences: 1657284
Number of extensions: 8438628
Number of successful extensions: 20225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20222
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34989170748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)