Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I08
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    26   3.1  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.5  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   9.5  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   9.5  

>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 88  KGLSSSIAVTL*RVPLVVLITMIPSWVQ 171
           K LS  +  T+  + +++ +T +PSWVQ
Sbjct: 53  KRLSIIVWTTVYLIGIIIQVTTVPSWVQ 80


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 379 SSCVINKAAKRQPVH 335
           SSC+++ A KRQ VH
Sbjct: 82  SSCIVSNARKRQSVH 96


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 35  HSFHSHEMPLKLLETSTAKGSALP*LLP 118
           H+FH H   ++L++TS      +P LLP
Sbjct: 70  HAFHYHNKKIRLVDTS-LNNLPVPILLP 96


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 7/38 (18%), Positives = 18/38 (47%)
 Frame = -2

Query: 483 KHKILLKIRNIIFYQYFLTSSLYTSICDLVLTFAAAHV 370
           +HK+   +  ++ Y++ + + +  S+C         HV
Sbjct: 805 EHKVQGSVNTLVLYKHLIVAGINASVCIFEYEHGTMHV 842


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,124
Number of Sequences: 5004
Number of extensions: 38237
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)