Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I08
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0342 + 2451314-2451345,2451536-2451730,2452548-2452587           29   1.8  
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366...    28   4.2  
06_03_0588 + 22567820-22570802,22570917-22571269                       27   9.7  
03_05_0812 + 27890030-27890219,27890618-27890916,27891603-278918...    27   9.7  
01_05_0620 + 23742950-23743794,23745705-23746508,23746593-23747793     27   9.7  

>02_01_0342 + 2451314-2451345,2451536-2451730,2452548-2452587
          Length = 88

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = -2

Query: 483 KHKILLKIRNIIFYQYFLTSSLYTSICDLVLTF 385
           ++K  LK+ +++F+QY     ++++ C  ++TF
Sbjct: 11  RYKYHLKVLHVLFFQYMHRLEIFSNFCSSLVTF 43


>04_04_1193 + 31634043-31634349,31634685-31634847,31635048-31636622,
            31636653-31637541,31639401-31641266
          Length = 1599

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -3

Query: 233  HGRWVNL--KHRFSLRDFGMRSCWTQDGIIVIKTTNGTRHKVTAMEELS 93
            +G+W++L  +H   L+   + SCW   G+ + +  NG  + ++A E  S
Sbjct: 1147 NGKWLSLMLQHAEVLQKLSITSCWQIRGLSIGEEENGHPNLMSATEASS 1195


>06_03_0588 + 22567820-22570802,22570917-22571269
          Length = 1111

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -2

Query: 339 YTFNHLSDILFLTLKPIMSQLAEILTIQKNLEENFTRKMGELETQIQSAGLRN---AILL 169
           Y     +D  F++     S+L E++    NL+ N    +G L + ++   LRN   + L+
Sbjct: 422 YNMLEANDWSFVSSLSNCSRLTELMLDGNNLQGNLPSSIGNLSSSLEYLWLRNNQISWLI 481

Query: 168 DPG 160
            PG
Sbjct: 482 PPG 484


>03_05_0812 +
           27890030-27890219,27890618-27890916,27891603-27891840,
           27892098-27892433,27892522-27892607,27892703-27892810,
           27892918-27893225,27893304-27893567,27893660-27894431
          Length = 866

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 22  FPASSLFPLT*DATEAFGNFNSKGLSSSIAV 114
           FP   L+P T D T A     +KG+ +SI++
Sbjct: 836 FPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866


>01_05_0620 + 23742950-23743794,23745705-23746508,23746593-23747793
          Length = 949

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 8/30 (26%), Positives = 21/30 (70%)
 Frame = -2

Query: 291 IMSQLAEILTIQKNLEENFTRKMGELETQI 202
           ++ ++ E+L  + NL++  T+ +G+L T++
Sbjct: 11  LLKKVCELLMAELNLDKKLTKSIGDLRTEL 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,300,621
Number of Sequences: 37544
Number of extensions: 230859
Number of successful extensions: 568
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)