Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I08
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.6  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   6.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.1  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   6.1  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   8.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.1  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 20  DFLPHHSFHSH 52
           DF+P+HS H H
Sbjct: 119 DFVPNHSSHEH 129


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 160 SWVQQDRIPKSRRLNLCFKF 219
           +W+   R   SR L+LC KF
Sbjct: 484 AWIGAGRDSDSRLLDLCTKF 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 173 CWTQDGIIVIKTTNG 129
           CWTQD  I+  T  G
Sbjct: 212 CWTQDEDIICSTPIG 226


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 193 GTSECDPAGPRMES 152
           G + CDP G R++S
Sbjct: 57  GEAPCDPVGRRLKS 70


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 173 CWTQDGIIVIKTTNG 129
           CWTQD  ++  T  G
Sbjct: 159 CWTQDEDVICSTPIG 173


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 193 GTSECDPAGPRMES 152
           G + CDP G R++S
Sbjct: 57  GEAPCDPVGRRLKS 70


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 277 KLRHDGLECEEQDVT*MVEG 336
           KL  DGL C E+D    ++G
Sbjct: 69  KLLSDGLMCVEKDSIHSIDG 88


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -2

Query: 291 IMSQLAEILTIQKNLEENFTRKMGELETQIQSAGLRNAILLDPGW 157
           ++S    ++    N  +  T KMG   +Q+    L+N I+    W
Sbjct: 28  LLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,704
Number of Sequences: 438
Number of extensions: 2441
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)