Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I07
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   3.5  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    26   3.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.5  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   8.2  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    25   8.2  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    25   8.2  

>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +1

Query: 274 LNECVKACDPAKLSLENYYKAARSVLKQRKYEE 372
           LN+C +         + YY++A++++  ++Y+E
Sbjct: 122 LNDCAQVLQRDSTHAKAYYRSAKALVALKRYDE 154


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/50 (22%), Positives = 22/50 (44%)
 Frame = -1

Query: 319 PVIILQDHTLLRIHLKNQICLRSLHSPSTEI*CISFCSSHRRTL*RIQTY 170
           P  ++  +   R H+       +LH+P+  + C   C+ +   L  I+ Y
Sbjct: 752 PFNMMMCNNTSRYHVARMALQHALHNPTVAVNCNMLCAKYAWKLEEIENY 801


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 205  LNKRKCIKFPYSGYGGNVNRFDSLNECVKACDPAKL---SLENYYK 333
            +N R+ I+  Y  +   +  FDS+N   KAC P  L   S+ NY K
Sbjct: 3276 INLRRKIEQDY--FSNPIFTFDSVNRASKACGPLLLWIKSICNYSK 3319


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 130 CYMKIDPGKKTEKNKSEYVTKYAYDLNKRKCIKF 231
           C++K+      E + +E + + A DL KR  IKF
Sbjct: 413 CHIKVRRNHIFEDSYAEIMRQSATDLKKRLMIKF 446


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 163 EKNKSEYVTKYAYD-LNKRKCIKF 231
           EKN  EY+ K  +D LN++K   F
Sbjct: 264 EKNPKEYILKLLFDHLNRKKTNNF 287


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 213 FVQVIG--VLCNVFRLILLCFLSGINLHIANFIRXQG 109
           FV + G  V C+V    L+  +S +NL+I    R QG
Sbjct: 344 FVNIFGGIVRCDVIAKGLISVVSALNLNIPIICRLQG 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,478,278
Number of Sequences: 5004
Number of extensions: 28695
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)