Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I06
         (817 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   121   8e-30
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    24   1.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   8.9  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  121 bits (291), Expect = 8e-30
 Identities = 74/218 (33%), Positives = 122/218 (55%), Gaps = 10/218 (4%)
 Frame = +3

Query: 153 KMSANDIYAKCTFSMLKGKIDCRILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTG 332
           K++ ND     T     G +   +L  +++ G+ +PT IQ  A+P +L  +DL+  A+TG
Sbjct: 147 KVTGNDAPPPITSFETSG-LRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTG 205

Query: 333 SGKTLAFLIPAVDQLIKLGFTLKHGTGC-----IILSPTRELALQTFEVLKRLLTDIDIS 497
           SGKT AF++P +  L+           C     +I+SPTRELA+Q  +  K+   +  + 
Sbjct: 206 SGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVK 265

Query: 498 HCLIVGGEKKNKDVSKLQKGMNIVVSTPGRLLDHLQTTN-TFNCKNLKCLIIDEADKLLE 674
             +I GG   N    ++  G +I+V+TPGRL D +   N +FN  +LK  ++DEAD++L+
Sbjct: 266 VAVIYGGTSTNHQRGRILGGCHILVATPGRLKDFVNRGNVSFN--SLKYFVLDEADRMLD 323

Query: 675 SGFEKHVNGIL--EKLP--NDKQTVLFSATIDDRVKNL 776
            GF   V  +L  + +P   ++QT++FSAT  + V+ L
Sbjct: 324 MGFLGDVEEMLSHQSMPATGERQTLMFSATFPEEVQQL 361


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 579 EYSLQYSCLFVAWTHPYFFSHLQQSSNVKYQYL 481
           +Y+L YS +    T+   F    QSSN +  Y+
Sbjct: 363 DYTLLYSIVGAVTTYLVIFIQFDQSSNSRNNYV 395


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 386 WIYSKTWYRLH 418
           W+ S+TW  LH
Sbjct: 470 WLLSQTWITLH 480


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 386 WIYSKTWYRLH 418
           W+ S+TW  LH
Sbjct: 470 WLLSQTWITLH 480


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 386 WIYSKTWYRLH 418
           W+ S+TW  LH
Sbjct: 470 WLLSQTWITLH 480


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 386 WIYSKTWYRLH 418
           W+ S+TW  LH
Sbjct: 470 WLLSQTWITLH 480


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 262 HVFKLRHCPIYYNR 303
           ++ +L++C IY+NR
Sbjct: 140 NLIRLKNCVIYFNR 153


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,662
Number of Sequences: 336
Number of extensions: 3838
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)