Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_I06
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 201 1e-52
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 165 5e-42
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 164 1e-41
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 151 9e-38
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 150 2e-37
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 140 2e-34
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 138 1e-33
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 137 2e-33
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 135 6e-33
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 131 1e-31
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 126 5e-30
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 123 3e-29
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 120 3e-28
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 118 1e-27
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 116 5e-27
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 114 2e-26
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 111 1e-25
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 109 6e-25
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 105 1e-23
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 95 1e-20
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 91 2e-19
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 85 1e-17
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 83 5e-17
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.20
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.20
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 2.4
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 27 3.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.6
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 7.4
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 7.4
SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi... 26 7.4
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 9.7
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 201 bits (490), Expect = 1e-52
Identities = 98/198 (49%), Positives = 143/198 (72%), Gaps = 1/198 (0%)
Frame = +3
Query: 222 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 401
I +++MGFE T IQ +++P LL +D++GAAKTGSGKTLAFLIP ++ L L F +
Sbjct: 100 IQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPR 159
Query: 402 HGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTP 581
+GTG II+SPTRELALQ F V K LL + +++GG + + KL KG+N++V+TP
Sbjct: 160 NGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATP 219
Query: 582 GRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLPND-KQTVLFSATID 758
GRLLDHLQ T F +NL+ L+IDEAD++LE GFE + I++ LP++ +QT+LFSAT
Sbjct: 220 GRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQT 279
Query: 759 DRVKNLXRLALRSDPIWI 812
+V++L R++L+ P+++
Sbjct: 280 TKVEDLARISLKPGPLYV 297
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 165 bits (402), Expect = 5e-42
Identities = 84/190 (44%), Positives = 124/190 (65%)
Frame = +3
Query: 228 STLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLKHG 407
S L+ F T IQ Q +P L+ +D++GAAKTGSGKTLAF++P ++ L + +T G
Sbjct: 52 SALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDG 111
Query: 408 TGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTPGR 587
G +++SPTRELA+QTFE L ++ S LI+GG ++ +L + MNI+V TPGR
Sbjct: 112 LGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGR 170
Query: 588 LLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLPNDKQTVLFSATIDDRV 767
LL H+ F+ L+ LI+DEAD++L+ GF ++ I+ LP +QT+LFSAT V
Sbjct: 171 LLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSV 230
Query: 768 KNLXRLALRS 797
K+L RL+L++
Sbjct: 231 KDLARLSLQN 240
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 164 bits (399), Expect = 1e-41
Identities = 80/190 (42%), Positives = 125/190 (65%)
Frame = +3
Query: 222 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 401
IL L +GFE PT+IQ + +P L KD++GAA TGSGKT AF++P +++L+ +
Sbjct: 270 ILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVP 329
Query: 402 HGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTP 581
T +IL PTRELA+Q V ++ + DI CL +GG +L+K +IV++TP
Sbjct: 330 T-TRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATP 388
Query: 582 GRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLPNDKQTVLFSATIDD 761
GR +DH++ + F +N++ +++DEAD++LE GF +N I++ P +QT+LFSAT+ D
Sbjct: 389 GRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTD 448
Query: 762 RVKNLXRLAL 791
+V +L RL+L
Sbjct: 449 KVDDLIRLSL 458
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 151 bits (367), Expect = 9e-38
Identities = 88/207 (42%), Positives = 128/207 (61%), Gaps = 5/207 (2%)
Frame = +3
Query: 210 IDCRILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLG 389
+ + +S + +G+E+PT IQAQA+P + +D+IG AKTGSGKT+AFL+P + + IK
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLP-MFRHIKDQ 483
Query: 390 FTLKHGTG--CIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMN 563
LK G G II++PTRELA+Q F K L ++I C GG ++ L++G
Sbjct: 484 RPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAE 543
Query: 564 IVVSTPGRLLDHLQTTNTFNCKNL-KC--LIIDEADKLLESGFEKHVNGILEKLPNDKQT 734
IVV TPGR++D L + N NL +C L++DEAD++ + GFE V I+ + D+QT
Sbjct: 544 IVVCTPGRMIDVL-SANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQT 602
Query: 735 VLFSATIDDRVKNLXRLALRSDPIWIT 815
VLFSAT ++ L R L+ P+ IT
Sbjct: 603 VLFSATFPRAMEALARKVLKK-PVEIT 628
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 150 bits (364), Expect = 2e-37
Identities = 82/202 (40%), Positives = 126/202 (62%)
Frame = +3
Query: 186 TFSMLKGKIDCRILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPA 365
TF L G ID + ++GF+ PT IQ +A+P +L ++D+IG A+TGSGKT AF +P
Sbjct: 47 TFKEL-GVID-ELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPV 104
Query: 366 VDQLIKLGFTLKHGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSK 545
+ +L + ++L+PTRELA Q E + + I + +IVGG
Sbjct: 105 IQEL----WNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVA 160
Query: 546 LQKGMNIVVSTPGRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLPND 725
L K +++V TPGRL+DHL+ T F+ KNLK LI+DEAD+LL+ F ++ IL+ +P++
Sbjct: 161 LSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHE 220
Query: 726 KQTVLFSATIDDRVKNLXRLAL 791
++T+LFSAT+ +V+ L R +L
Sbjct: 221 RRTLLFSATMTSKVEKLQRASL 242
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 140 bits (340), Expect = 2e-34
Identities = 77/197 (39%), Positives = 115/197 (58%)
Frame = +3
Query: 222 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 401
+L + + GF+ PT IQ + +P LL+ +D++G A+TGSGKT AF+IP ++ L
Sbjct: 80 LLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHL--KSTLAN 137
Query: 402 HGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTP 581
T +ILSP RELALQT +V+K D+ IVGG + S L +IVV+TP
Sbjct: 138 SNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATP 197
Query: 582 GRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLPNDKQTVLFSATIDD 761
GR L HL+ +++ ++ DEAD+L E GF + IL LP +QT+LFSAT+
Sbjct: 198 GRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPR 256
Query: 762 RVKNLXRLALRSDPIWI 812
+ + + L+ DP+ +
Sbjct: 257 TLVDFAKAGLQ-DPVLV 272
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 138 bits (333), Expect = 1e-33
Identities = 76/200 (38%), Positives = 121/200 (60%), Gaps = 2/200 (1%)
Frame = +3
Query: 222 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 401
+L ++Q+GFE PT IQ QA P + +D++G + TGSGKTL++ +PA+ I L
Sbjct: 133 VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH-INAQPLLS 191
Query: 402 HGTG--CIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVS 575
G G ++L+PTRELA+Q + + I + + GG + + L +G+ I ++
Sbjct: 192 PGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIA 251
Query: 576 TPGRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLPNDKQTVLFSATI 755
TPGRLLD L + T N + + L++DEAD++L+ GFE + I++++ D+QTV+FSAT
Sbjct: 252 TPGRLLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATW 310
Query: 756 DDRVKNLXRLALRSDPIWIT 815
V+ L R L +D I +T
Sbjct: 311 PKEVQRLARDYL-NDYIQVT 329
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 137 bits (331), Expect = 2e-33
Identities = 76/194 (39%), Positives = 120/194 (61%), Gaps = 5/194 (2%)
Frame = +3
Query: 249 FERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLKHGTGCIILS 428
++ PT IQA PYLL +D++G A+TGSGKT+AF IPA+ L L K +++S
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDN-KSVPRVLVVS 243
Query: 429 PTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTPGRLLDHLQT 608
PTRELA+QT+E L L+ ++ ++ GG K++ ++ K ++++ TPGRLLD L
Sbjct: 244 PTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQ-ARAAKNASVIIGTPGRLLD-LIN 301
Query: 609 TNTFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLPN-----DKQTVLFSATIDDRVKN 773
+ +C + L++DEAD++L++GFE+ + I+ P+ +QTV FSAT + V+
Sbjct: 302 DGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRA 361
Query: 774 LXRLALRSDPIWIT 815
L L+ DP+ IT
Sbjct: 362 LAATFLK-DPVKIT 374
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 135 bits (327), Expect = 6e-33
Identities = 82/219 (37%), Positives = 127/219 (57%), Gaps = 23/219 (10%)
Frame = +3
Query: 207 KIDCRILSTLR-QMGFERPTRIQAQALPYLLQ--QKDLIGAAKTGSGKTLAFLIPAVDQL 377
++D ++ L +M PT IQ+ LP LL KD A+TGSGKTLA+L+P V +L
Sbjct: 144 QLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRL 203
Query: 378 IKLG---FTLKHGTGCIILSPTRELALQTFEVLKRLLTDIDISH----CLIVGGEKKNKD 536
I+L T G +I++PTREL Q + V +L + +SH C ++GGEKK +
Sbjct: 204 IRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNN-PLSHWIVSCNVIGGEKKKSE 262
Query: 537 VSKLQKGMNIVVSTPGRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGILE-- 710
++++KG+NI++ TPGRL DHL+ T + ++ +++DE D+L++ GFE+ + IL
Sbjct: 263 KARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYL 322
Query: 711 -----------KLPNDKQTVLFSATIDDRVKNLXRLALR 794
+P+ K T+L SAT+ D VK L AL+
Sbjct: 323 ESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALK 361
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 131 bits (316), Expect = 1e-31
Identities = 78/203 (38%), Positives = 124/203 (61%), Gaps = 10/203 (4%)
Frame = +3
Query: 210 IDCRILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLG 389
ID + + + GF++ T +QA A+P L+ KDL+ A TGSGKTLA+L+P D++ +
Sbjct: 8 IDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRD 67
Query: 390 FTLKHGTGCIILSPTRELALQTFEVLKRLLT----DIDISHCLI----VGGE--KKNKDV 539
T + G G +I++PTRELA Q F V K LL +D L+ +GG+ N
Sbjct: 68 -TDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLA 126
Query: 540 SKLQKGMNIVVSTPGRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLP 719
S +K ++V+ TPGRL + L + + K+L+ LI+DEAD L++ GF++ + I+ +LP
Sbjct: 127 SFREKNPSVVIGTPGRLNEML---SHISSKHLEILILDEADTLIDMGFQRTLQSIISQLP 183
Query: 720 NDKQTVLFSATIDDRVKNLXRLA 788
++T LFSAT++D V + ++A
Sbjct: 184 KQRRTGLFSATMNDTVSSFLKIA 206
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 126 bits (303), Expect = 5e-30
Identities = 82/221 (37%), Positives = 124/221 (56%), Gaps = 23/221 (10%)
Frame = +3
Query: 222 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIP---AVDQLIKLGF 392
+L L+++ ++ P+ IQ A+P LLQ+KDLIG A+TGSGKT AF+IP A+ +L L
Sbjct: 260 MLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTE 319
Query: 393 TLKH-GTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIV 569
+ H G ++L+PTRELA Q + + +VGG + ++ +G +IV
Sbjct: 320 SNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIV 379
Query: 570 VSTPGRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLPND-------- 725
V+TPGRLLD L+ F +++DEAD++L+ GFE VN IL LP+
Sbjct: 380 VATPGRLLDCLE-RRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGS 438
Query: 726 -----------KQTVLFSATIDDRVKNLXRLALRSDPIWIT 815
+QT++FSAT+ RV NL + L +P+ +T
Sbjct: 439 ILATANSSSSRRQTIMFSATLPPRVANLAKSYL-IEPVMLT 478
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 123 bits (297), Expect = 3e-29
Identities = 71/204 (34%), Positives = 116/204 (56%), Gaps = 7/204 (3%)
Frame = +3
Query: 222 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 401
++ TL+ + PT IQ + +L+ ++ IG AKTGSGKT AF +P +++ K
Sbjct: 18 LIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKD----P 73
Query: 402 HGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTP 581
G +IL+PTRELA+Q E L ++++ H LIVGG + L K ++VV+TP
Sbjct: 74 SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATP 133
Query: 582 GRLLDHLQTT---NTFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLP--NDKQTVLFS 746
GRL D +++ + +K L++DEAD+LL F ++ LP D+QT+LF+
Sbjct: 134 GRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFT 193
Query: 747 ATIDDRVKNLXRLALRSD--PIWI 812
AT+ D ++ L +++ P+W+
Sbjct: 194 ATVTDAIRQLKYQPQKNNKPPLWL 217
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 120 bits (288), Expect = 3e-28
Identities = 69/184 (37%), Positives = 105/184 (57%)
Frame = +3
Query: 222 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 401
+L + + GFERP+ IQ +++P L +D++ AK G+GKT AF+IP+++++ T K
Sbjct: 55 LLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVD----TKK 110
Query: 402 HGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTP 581
+IL PTRELALQT +V K L +++ + GG D+ +L ++IVV TP
Sbjct: 111 SKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTP 170
Query: 582 GRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLPNDKQTVLFSATIDD 761
GR+LD L + ++DEADKLL F + +L P ++Q L+SAT
Sbjct: 171 GRVLD-LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPL 229
Query: 762 RVKN 773
VKN
Sbjct: 230 IVKN 233
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 118 bits (283), Expect = 1e-27
Identities = 70/195 (35%), Positives = 113/195 (57%), Gaps = 4/195 (2%)
Frame = +3
Query: 228 STLRQMGFERPTRIQAQALPYLL-QQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLKH 404
++L + GFE+ T +Q + L + +++ + AKTG+GKTLAFL+ A ++K L
Sbjct: 51 NSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNS 110
Query: 405 GT-GCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKG-MNIVVST 578
+ILSPTRELALQ FE ++L I +GG K ++ + +++G N++++T
Sbjct: 111 SKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIAT 170
Query: 579 PGRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLPNDK-QTVLFSATI 755
PGRL DHLQ + I+DEAD+L++ GF + + I E + K + + FSAT+
Sbjct: 171 PGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATM 230
Query: 756 DDRVKNLXRLALRSD 800
+V N+ R L +D
Sbjct: 231 PPKVSNVFRGILGTD 245
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 116 bits (278), Expect = 5e-27
Identities = 70/203 (34%), Positives = 113/203 (55%)
Frame = +3
Query: 159 SANDIYAKCTFSMLKGKIDCRILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSG 338
++ D+ A +F + K D +L + G+E P+ +Q++A+ + + +D+I A++G+G
Sbjct: 13 TSEDVNAVSSFEEMNLKED--LLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTG 70
Query: 339 KTLAFLIPAVDQLIKLGFTLKHGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGG 518
KT F I + Q I L T +ILSPTRELA+Q V+ L +++ +GG
Sbjct: 71 KTATFSI-GILQSIDLSV---RDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGG 126
Query: 519 EKKNKDVSKLQKGMNIVVSTPGRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVN 698
D+ KL G ++V TPGR+ D ++ N +N+K LI+DEAD+LL GF++ +
Sbjct: 127 TSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRN-LRTRNVKMLILDEADELLNQGFKEQIY 185
Query: 699 GILEKLPNDKQTVLFSATIDDRV 767
I LP Q V+ SAT+ V
Sbjct: 186 DIYRYLPPGTQVVVVSATLPQDV 208
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 114 bits (274), Expect = 2e-26
Identities = 67/201 (33%), Positives = 111/201 (55%), Gaps = 5/201 (2%)
Frame = +3
Query: 210 IDCRILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLG 389
+D R+ + + FE+PT +Q++ +P L+ KDL+ A+TGSGKT A+LIP ++ L+K
Sbjct: 21 LDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQK 80
Query: 390 FTLKHGTG--CIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSK---LQK 554
++ G ++L PTRELA Q + VL++ LT H + + D + L
Sbjct: 81 QIDENQRGIFALLLVPTRELAQQVYNVLEK-LTAFCSKHIRFINVATNSSDTVQRPLLLD 139
Query: 555 GMNIVVSTPGRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLPNDKQT 734
+IV++TP R + H+ + LK L+IDEAD +L G+ + + + LP Q+
Sbjct: 140 LPDIVIATPSRCVVHV-ASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQS 198
Query: 735 VLFSATIDDRVKNLXRLALRS 797
L SAT+ + +L +L R+
Sbjct: 199 FLMSATLSKNIASLQKLVCRN 219
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 111 bits (267), Expect = 1e-25
Identities = 69/185 (37%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Frame = +3
Query: 222 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 401
+L +L + GF +P IQ+ +P D+IG A TGSGKTLAF IP ++ ++ K
Sbjct: 133 MLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLR-NVDAK 191
Query: 402 HGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTP 581
+ ++++PTRELA Q + + + +I I GG K L K ++VV+TP
Sbjct: 192 Y-VQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATP 250
Query: 582 GRLLDHLQTTN-TFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLPN----DKQTVLFS 746
GRL + N T N K +KCL++DEAD+LL+ + ++ +LE L N +QT +FS
Sbjct: 251 GRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFS 310
Query: 747 ATIDD 761
AT D+
Sbjct: 311 ATFDE 315
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 109 bits (261), Expect = 6e-25
Identities = 68/197 (34%), Positives = 112/197 (56%)
Frame = +3
Query: 222 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 401
+L + GFERP+ IQ +A+ +L ++D++ A++G+GKT F ++ L K+ +LK
Sbjct: 30 LLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATF---SISVLQKIDTSLK 86
Query: 402 HGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTP 581
+IL+PTRELA Q +V+ L +++ +GG D++ LQ G+++VV TP
Sbjct: 87 Q-CQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTP 145
Query: 582 GRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLPNDKQTVLFSATIDD 761
GR+ D +Q ++ ++DEAD++L GF+ + I + LP Q VL SAT+
Sbjct: 146 GRVHDMIQ-RRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQ 204
Query: 762 RVKNLXRLALRSDPIWI 812
V + +R DPI I
Sbjct: 205 DVLEVTTKFMR-DPIRI 220
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 105 bits (251), Expect = 1e-23
Identities = 64/209 (30%), Positives = 110/209 (52%), Gaps = 18/209 (8%)
Frame = +3
Query: 210 IDCRILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIP--------- 362
++ +L ++ G+ +PT +Q ++P + +DL+ A+TGSGKT FL P
Sbjct: 176 LNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKG 235
Query: 363 ----AVDQLIKLGF-TLKHGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKK 527
VDQ +G+ K +IL+PTREL Q E ++ + C + GG
Sbjct: 236 PAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADI 295
Query: 528 NKDVSKLQKGMNIVVSTPGRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGIL 707
+ ++ +G +++ +TPGRL+D L + N+K L++DEAD++L+ GFE + I+
Sbjct: 296 RAQIRQIDQGCDLLSATPGRLVD-LIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIV 354
Query: 708 EKLP----NDKQTVLFSATIDDRVKNLXR 782
E ++QT++FSAT ++ L R
Sbjct: 355 EGADMTSVEERQTLMFSATFPRDIQLLAR 383
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 95.1 bits (226), Expect = 1e-20
Identities = 68/200 (34%), Positives = 107/200 (53%), Gaps = 3/200 (1%)
Frame = +3
Query: 222 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 401
+ L++ T IQ A+P + ++DL+ A TGSGKT+A+L P L KL +
Sbjct: 57 LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPI---LQKLQLHVP 113
Query: 402 HGTGCIILSPTRELALQTFEVLKRLL--TDIDISHCLIVGGEKKNKDVSKLQKGMNIVVS 575
G II++PTREL Q + ++L T + I L EK + KL++ ++ +
Sbjct: 114 GGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIE-LSKSNEKIQEKAPKLREKYDMCIG 172
Query: 576 TPGRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGILEKLPNDK-QTVLFSAT 752
TP RL+ +QT +F + ++ ++DEAD+L E GF + + IL + LFSAT
Sbjct: 173 TPMRLVQAIQTGLSF--EKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSAT 230
Query: 753 IDDRVKNLXRLALRSDPIWI 812
I RV+ L ++ + DPI I
Sbjct: 231 IPSRVEELAKV-VTVDPIRI 249
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 91.1 bits (216), Expect = 2e-19
Identities = 56/188 (29%), Positives = 101/188 (53%), Gaps = 15/188 (7%)
Frame = +3
Query: 210 IDCRILSTLRQMGFERPTRIQAQALPYLLQQK----------DLIGAAKTGSGKTLAFLI 359
I +++ L++ R +QA LP LLQ D+ +A TGSGKTL+++I
Sbjct: 133 ISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVI 192
Query: 360 PAVDQLIKLGFTLKHGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDV 539
P V L T+ C+++ PTREL +Q + + ++ + C G + +
Sbjct: 193 PIVQCLSHR--TVPR-LRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHET 249
Query: 540 SKLQKGMN-----IVVSTPGRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGFEKHVNGI 704
+L N ++VSTPGRL+DH++ +F+ ++L+ ++IDEAD+LL+ F+ V+ +
Sbjct: 250 YQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTV 309
Query: 705 LEKLPNDK 728
+ ++ + K
Sbjct: 310 MMEISHPK 317
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 84.6 bits (200), Expect = 1e-17
Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 5/192 (2%)
Frame = +3
Query: 222 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 401
+L + GFE P+ +Q +P + D++ AK+G GKT F++ + Q+ + +
Sbjct: 62 LLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEV- 120
Query: 402 HGTGCIILSPTRELALQTFEVLKRLLTDI-DISHCLIVGGEKKNKDVSKLQ---KGMNIV 569
++L TRELA Q R + D+ + GG +D+ + K +IV
Sbjct: 121 ---SVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 570 VSTPGRLLDHLQTTNTFNCKNLKCLIIDEADKLLES-GFEKHVNGILEKLPNDKQTVLFS 746
V+TPGR L+ L ++K ++DE DKLLES + + + P KQ ++FS
Sbjct: 178 VATPGR-LNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFS 236
Query: 747 ATIDDRVKNLXR 782
AT+ + ++ + +
Sbjct: 237 ATLSNEIRPICK 248
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 83.0 bits (196), Expect = 5e-17
Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 3/186 (1%)
Frame = +3
Query: 222 ILSTLRQMGFERPTRIQAQALPYLLQQ--KDLIGAAKTGSGKTLAFLIPAVDQLIKLGFT 395
+L + M F++P++IQ +ALP LL +++IG +++G+GKT AF A+ L ++ +
Sbjct: 125 LLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAF---ALTMLSRVDAS 181
Query: 396 LKHGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVS 575
+ I L+P+RELA Q +V+ + ++ + K+ + IV+
Sbjct: 182 VPKPQA-ICLAPSRELARQIMDVVTEMGKYTEVKTAFGI----KDSVPKGAKIDAQIVIG 236
Query: 576 TPGRLLDHLQTTNTFNCKNLKCLIIDEADKLLES-GFEKHVNGILEKLPNDKQTVLFSAT 752
TPG ++D L + +++K ++DEAD +L+ G I LP + Q VLFSAT
Sbjct: 237 TPGTVMD-LMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSAT 295
Query: 753 IDDRVK 770
+RV+
Sbjct: 296 FSERVE 301
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.1 bits (67), Expect = 0.20
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 291 LLQQKDLIGAAKTGSGKTLAFLIPAV 368
LL + +LI TG GK+L+FLIPA+
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.1 bits (67), Expect = 0.20
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 291 LLQQKDLIGAAKTGSGKTLAFLIPAV 368
LL + +LI TG GK+L+FLIPA+
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 270 QAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAV 368
Q +A+ L KD+ TG GK+L + +PAV
Sbjct: 524 QLEAINGTLSGKDVFILMPTGGGKSLCYQLPAV 556
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 697 FTCFSKPDSNSLSASSIIRHFRFLQLNVFV 608
F F PD ++L+ + ++RHF L + F+
Sbjct: 49 FLSFKSPDESTLTDTIVVRHFPDLVMEFFL 78
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 5.6
Identities = 36/155 (23%), Positives = 64/155 (41%)
Frame = -1
Query: 766 TLSSIVALKRTVCLSFGSFSSIPFTCFSKPDSNSLSASSIIRHFRFLQLNVFVVCK*SRS 587
T+SS ++ ++ +F S SSI + S P S SLS SS F + S S
Sbjct: 559 TISSGIS-SSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSS 617
Query: 586 LPGVLTTIFMPFCSLDTSLFFFSPPTIKQCEISISVKSLFSTSNVCRANSLVGDRMMQPV 407
+ T + P S TS S +I SI + S ST + + S ++
Sbjct: 618 ISSSSTILSSPTPS--TSSLMISSSSIISGSSSI-LSSSISTIPISSSLSTYSSSVIPSS 674
Query: 406 PCFRVNPSLIS*STAGIKKAKVFPLPVLAAPIRSF 302
+ S + S++ + + P+P ++ + ++
Sbjct: 675 STLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTY 709
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 163 LTIFMLSVHFPCSKVKSTVEFF 228
L+ F L +H PCS T+ FF
Sbjct: 42 LSFFALLLHLPCSIYSHTLHFF 63
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 576 TPGRLLDHLQTTNTFNCKNLKCLIIDEA-DKLLESG-FEKHVNGILEKLPNDKQTVLFSA 749
T G LL +Q L C+++DE ++ +E+ + ++ ++PN K +L SA
Sbjct: 678 TTGLLLRRIQQHGLGFLSTLSCVVVDEVHERSIENDILLTLLKLVISRIPNLK-VILMSA 736
Query: 750 TID 758
T++
Sbjct: 737 TVN 739
>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 435 RELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKG 557
R L ++T V+KR++ D++++H I EK+ + SK+ G
Sbjct: 6 RSLVIKT-NVVKRIIKDVELAHIDINEAEKRVQ--SKIDNG 43
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 549 QKGMNIVVSTPGRLLDHLQTTNTFNCKNLKCLIIDEADKLLESGF 683
+KG+ + S+ R + QT NC+ L+ +DE D GF
Sbjct: 253 EKGLTVWTSSMARTI---QTARHLNCQKLEWRALDELDAGTCDGF 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,236
Number of Sequences: 5004
Number of extensions: 63045
Number of successful extensions: 248
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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