Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_I01
(616 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;... 140 2e-32
UniRef50_UPI00015533A8 Cluster: PREDICTED: similar to Snrpf prot... 132 5e-30
UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotei... 131 1e-29
UniRef50_P62306 Cluster: Small nuclear ribonucleoprotein F; n=20... 131 1e-29
UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F, puta... 130 3e-29
UniRef50_P34659 Cluster: Probable small nuclear ribonucleoprotei... 127 2e-28
UniRef50_Q010Y9 Cluster: Ypt/Rab GTPase activating protein; n=13... 119 6e-26
UniRef50_A6S0C4 Cluster: Predicted protein; n=2; Ascomycota|Rep:... 97 3e-19
UniRef50_A7AQW8 Cluster: Small nuclear ribonucleoprotein F, puta... 96 7e-19
UniRef50_P54999 Cluster: Small nuclear ribonucleoprotein F; n=11... 93 5e-18
UniRef50_Q6BPY4 Cluster: Debaryomyces hansenii chromosome E of s... 90 4e-17
UniRef50_Q6CPH1 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 87 3e-16
UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm... 77 3e-13
UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;... 73 4e-12
UniRef50_A2EH12 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 73 4e-12
UniRef50_Q758M9 Cluster: AEL274Cp; n=1; Eremothecium gossypii|Re... 72 1e-11
UniRef50_A4HNB4 Cluster: Sm-f snRNP core complex protein, putati... 69 7e-11
UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm... 69 9e-11
UniRef50_A7EAP1 Cluster: Putative uncharacterized protein; n=2; ... 69 1e-10
UniRef50_Q8SS46 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN F; n=1;... 64 3e-09
UniRef50_Q4N728 Cluster: U6 small nuclear ribonucleoprotein, put... 63 6e-09
UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2; ... 61 2e-08
UniRef50_A1CE19 Cluster: LSM domain protein; n=3; Trichocomaceae... 61 2e-08
UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm... 60 3e-08
UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albica... 59 7e-08
UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2; T... 59 7e-08
UniRef50_Q5K712 Cluster: U6 snRNA-associated sm-like protein lsm... 59 9e-08
UniRef50_Q3LWJ8 Cluster: MRNA splicing factor snRNP-F; n=1; Bige... 58 1e-07
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 58 2e-07
UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4; Th... 56 9e-07
UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear ri... 55 1e-06
UniRef50_Q7RMQ6 Cluster: Putative uncharacterized protein PY0212... 55 2e-06
UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep... 54 4e-06
UniRef50_A7ARJ0 Cluster: Small nuclear ribonucleoprotein F, puta... 52 8e-06
UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10; A... 52 8e-06
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 52 1e-05
UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1; T... 52 1e-05
UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11; E... 51 3e-05
UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1; S... 50 4e-05
UniRef50_A7F5M4 Cluster: Putative uncharacterized protein; n=4; ... 50 6e-05
UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3; M... 49 1e-04
UniRef50_UPI00015BACE3 Cluster: Like-Sm ribonucleoprotein, core;... 47 4e-04
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 46 0.001
UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protei... 45 0.001
UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 44 0.002
UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus ful... 44 0.004
UniRef50_Q00UL7 Cluster: Putative Sm protein F; n=1; Ostreococcu... 43 0.007
UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1; ... 43 0.007
UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog... 43 0.007
UniRef50_A6S1F2 Cluster: Putative uncharacterized protein; n=3; ... 42 0.009
UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 42 0.015
UniRef50_Q06406 Cluster: U6 snRNA-associated Sm-like protein LSm... 42 0.015
UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein... 41 0.020
UniRef50_A0CSI7 Cluster: Chromosome undetermined scaffold_26, wh... 41 0.020
UniRef50_Q75BR7 Cluster: ACR204Cp; n=2; Saccharomycetales|Rep: A... 40 0.036
UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotei... 40 0.047
UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein... 40 0.062
UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1... 40 0.062
UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole gen... 39 0.082
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 39 0.082
UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like pr... 39 0.082
UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46... 38 0.19
UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein polypep... 38 0.25
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae... 38 0.25
UniRef50_Q7QVJ0 Cluster: GLP_21_27536_27300; n=1; Giardia lambli... 37 0.33
UniRef50_Q4UBR6 Cluster: U6 snrna-associated sm-like protein lsm... 37 0.33
UniRef50_Q4MZK0 Cluster: U6 snRNA-associated protein, putative; ... 37 0.33
UniRef50_Q8SRW7 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN G; n=1;... 37 0.44
UniRef50_Q2FM21 Cluster: Like-Sm ribonucleoprotein, core; n=4; M... 36 0.77
UniRef50_Q9QXA5 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 0.77
UniRef50_Q9Y4Z0 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 0.77
UniRef50_UPI000156133C Cluster: PREDICTED: similar to LSM4 homol... 36 1.0
UniRef50_Q8ZVU2 Cluster: Small nuclear ribonucleoprotein homolog... 36 1.0
UniRef50_UPI0000499412 Cluster: U6 snRNA-associated Sm-like prot... 35 1.3
UniRef50_Q976F1 Cluster: 86aa long hypothetical NADH dehydrogena... 35 1.3
UniRef50_A1ZD45 Cluster: Secreted enzyme, contains two amidohydr... 35 1.8
UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotei... 35 1.8
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T... 34 2.3
UniRef50_P40070 Cluster: U6 snRNA-associated Sm-like protein LSm... 33 4.1
UniRef50_A7TI36 Cluster: Putative uncharacterized protein; n=1; ... 33 5.4
UniRef50_Q1E7Q6 Cluster: Putative uncharacterized protein; n=1; ... 33 7.1
UniRef50_P43321 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 33 7.1
>UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;
Fungi/Metazoa group|Rep: Small nuclear ribonucleoprotein
F - Drosophila melanogaster (Fruit fly)
Length = 88
Score = 140 bits (339), Expect = 2e-32
Identities = 61/78 (78%), Positives = 70/78 (89%)
Frame = +3
Query: 54 MAAAMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGN 233
M+A MPINPKPFLN LTGK VLVKLKWG EYKG LVS DGYMN+QLANTEE+++G+ TGN
Sbjct: 1 MSAGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGN 60
Query: 234 LGEVLIRCNNVLYVRGAD 287
LGEVLIRCNNVLY++G +
Sbjct: 61 LGEVLIRCNNVLYIKGME 78
>UniRef50_UPI00015533A8 Cluster: PREDICTED: similar to Snrpf
protein; n=1; Mus musculus|Rep: PREDICTED: similar to
Snrpf protein - Mus musculus
Length = 209
Score = 132 bits (320), Expect = 5e-30
Identities = 57/78 (73%), Positives = 68/78 (87%)
Frame = +3
Query: 54 MAAAMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGN 233
+A ++P+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+
Sbjct: 122 VAMSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGH 181
Query: 234 LGEVLIRCNNVLYVRGAD 287
LGEVLIRCNNVLY+RG +
Sbjct: 182 LGEVLIRCNNVLYIRGVE 199
>UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotein
F; n=7; Magnoliophyta|Rep: Probable small nuclear
ribonucleoprotein F - Arabidopsis thaliana (Mouse-ear
cress)
Length = 88
Score = 131 bits (317), Expect = 1e-29
Identities = 57/74 (77%), Positives = 64/74 (86%)
Frame = +3
Query: 60 AAMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLG 239
A +P+NPKPFLN+LTGK+V+VKLKWG EYKG L S D YMNLQL NTEE +DG TGNLG
Sbjct: 2 ATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLG 61
Query: 240 EVLIRCNNVLYVRG 281
E+LIRCNNVLYVRG
Sbjct: 62 EILIRCNNVLYVRG 75
>UniRef50_P62306 Cluster: Small nuclear ribonucleoprotein F; n=20;
Euteleostomi|Rep: Small nuclear ribonucleoprotein F -
Homo sapiens (Human)
Length = 86
Score = 131 bits (316), Expect = 1e-29
Identities = 56/75 (74%), Positives = 66/75 (88%)
Frame = +3
Query: 63 AMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGE 242
++P+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+LGE
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 243 VLIRCNNVLYVRGAD 287
VLIRCNNVLY+RG +
Sbjct: 62 VLIRCNNVLYIRGVE 76
>UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F,
putative, expressed; n=5; Oryza sativa|Rep: Small
nuclear ribonucleoprotein F, putative, expressed - Oryza
sativa subsp. japonica (Rice)
Length = 86
Score = 130 bits (314), Expect = 3e-29
Identities = 57/74 (77%), Positives = 65/74 (87%)
Frame = +3
Query: 60 AAMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLG 239
A +P+NPKPFLN+LTGK V+VKLKWG EYKG LVS D YMNLQLANTEE +DG +GNLG
Sbjct: 2 ATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLG 61
Query: 240 EVLIRCNNVLYVRG 281
E+LIRCNNVLY+RG
Sbjct: 62 EILIRCNNVLYLRG 75
>UniRef50_P34659 Cluster: Probable small nuclear ribonucleoprotein
F; n=13; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein F - Caenorhabditis elegans
Length = 85
Score = 127 bits (306), Expect = 2e-28
Identities = 56/78 (71%), Positives = 64/78 (82%)
Frame = +3
Query: 54 MAAAMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGN 233
M+A P+NPKPFLNSLTGK V+ KLKWG EYKG+LV+ D YMNLQLA+ EE +DG GN
Sbjct: 1 MSAVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGN 60
Query: 234 LGEVLIRCNNVLYVRGAD 287
LGE+LIRCNNVLYV G D
Sbjct: 61 LGEILIRCNNVLYVGGVD 78
>UniRef50_Q010Y9 Cluster: Ypt/Rab GTPase activating protein; n=13;
Eukaryota|Rep: Ypt/Rab GTPase activating protein -
Ostreococcus tauri
Length = 836
Score = 119 bits (286), Expect = 6e-26
Identities = 53/73 (72%), Positives = 61/73 (83%)
Frame = +3
Query: 69 PINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVL 248
PINPKPFL +LTGK V V+LKWG EY+G LVSTD YMNLQLA+TEE +DG G LGEVL
Sbjct: 761 PINPKPFLAALTGKRVAVRLKWGMEYRGFLVSTDAYMNLQLASTEEYIDGELQGALGEVL 820
Query: 249 IRCNNVLYVRGAD 287
IRCNNV+Y+RG +
Sbjct: 821 IRCNNVMYLRGVE 833
>UniRef50_A6S0C4 Cluster: Predicted protein; n=2; Ascomycota|Rep:
Predicted protein - Botryotinia fuckeliana B05.10
Length = 91
Score = 97.1 bits (231), Expect = 3e-19
Identities = 43/75 (57%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
Frame = +3
Query: 66 MPINPKPFLNSLTGKSVLVKLKWGH--EYKGLLVSTDGYMNLQLANTEELVDGTCTGNLG 239
+PINP+PFL +L + V+++LKWG EYKG LVS D YMN+QL+ EE +D T LG
Sbjct: 4 VPINPRPFLQNLVNEEVIIRLKWGGQTEYKGKLVSIDSYMNIQLSGAEEWIDSEMTSTLG 63
Query: 240 EVLIRCNNVLYVRGA 284
+VLIRCNNVLY+ A
Sbjct: 64 QVLIRCNNVLYISAA 78
>UniRef50_A7AQW8 Cluster: Small nuclear ribonucleoprotein F,
putative; n=1; Babesia bovis|Rep: Small nuclear
ribonucleoprotein F, putative - Babesia bovis
Length = 94
Score = 95.9 bits (228), Expect = 7e-19
Identities = 44/77 (57%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Frame = +3
Query: 60 AAMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL- 236
A P+NPKPFL L G++V V LKWG EYKG L S D YMN++L N EE +G G L
Sbjct: 18 AVTPLNPKPFLAKLVGQNVFVTLKWGMEYKGFLKSFDSYMNIELENAEEWENGVMKGTLG 77
Query: 237 GEVLIRCNNVLYVRGAD 287
G +LIRCNNVL++R A+
Sbjct: 78 GTILIRCNNVLHIRAAE 94
>UniRef50_P54999 Cluster: Small nuclear ribonucleoprotein F; n=11;
Eukaryota|Rep: Small nuclear ribonucleoprotein F -
Saccharomyces cerevisiae (Baker's yeast)
Length = 86
Score = 93.1 bits (221), Expect = 5e-18
Identities = 45/80 (56%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = +3
Query: 42 EPAKMAAAMPINPKPFLNSLTGKSVLVKLKWGH-EYKGLLVSTDGYMNLQLANTEELVDG 218
E + ++A P+NPKPFL L V VKLK+ EY+G LVSTD Y NLQL EE V G
Sbjct: 3 ESSDISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAG 62
Query: 219 TCTGNLGEVLIRCNNVLYVR 278
G LGE+ IRCNNVLY+R
Sbjct: 63 VSHGTLGEIFIRCNNVLYIR 82
>UniRef50_Q6BPY4 Cluster: Debaryomyces hansenii chromosome E of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome E of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 101
Score = 89.8 bits (213), Expect = 4e-17
Identities = 44/79 (55%), Positives = 56/79 (70%), Gaps = 4/79 (5%)
Frame = +3
Query: 54 MAAAMPINPKPFLNSLTGKSVLVKLKWGH-EYKGLLVSTDGYMNLQLANTEELV--DGTC 224
M++ PINPKPFL +L GK V+V+LKW EYKG L+S D YMNLQL T E++ DG
Sbjct: 1 MSSFQPINPKPFLKTLIGKQVIVRLKWNKTEYKGTLISIDNYMNLQLDKTSEVIYEDGEK 60
Query: 225 TGN-LGEVLIRCNNVLYVR 278
+GE+ IRCNNVL++R
Sbjct: 61 KEEVIGEIFIRCNNVLFIR 79
>UniRef50_Q6CPH1 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome E of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=2; Saccharomycetaceae|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 112
Score = 87.0 bits (206), Expect = 3e-16
Identities = 40/70 (57%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Frame = +3
Query: 69 PINPKPFLNSLTGKSVLVKLKWGH-EYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEV 245
PINPKPFL+ L K VLV LK+ +YKG LVS D Y NLQL + EE+++ +G +G++
Sbjct: 8 PINPKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDI 67
Query: 246 LIRCNNVLYV 275
IRCNNVLYV
Sbjct: 68 FIRCNNVLYV 77
>UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=33; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Schizosaccharomyces pombe (Fission yeast)
Length = 75
Score = 77.4 bits (182), Expect = 3e-13
Identities = 38/74 (51%), Positives = 46/74 (62%)
Frame = +3
Query: 66 MPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEV 245
M +P FLN + GK VL++L G +YKG+L DGYMNL L TEE V+G T G+
Sbjct: 1 MDSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDA 60
Query: 246 LIRCNNVLYVRGAD 287
IR NNVLYV D
Sbjct: 61 FIRGNNVLYVSALD 74
>UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;
Guillardia theta|Rep: Small nuclear ribonucleoprotein F
- Guillardia theta (Cryptomonas phi)
Length = 73
Score = 73.3 bits (172), Expect = 4e-12
Identities = 32/68 (47%), Positives = 45/68 (66%)
Frame = +3
Query: 72 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 251
+NPK LN+ K+V VKLKWG Y G+ + +D YMN+ L + E++ G LG VLI
Sbjct: 1 MNPKNILNNNYNKNVFVKLKWGSSYTGIFIGSDNYMNIILDSCSEVITEQNLGFLGLVLI 60
Query: 252 RCNNVLYV 275
RCNN+L++
Sbjct: 61 RCNNILFI 68
>UniRef50_A2EH12 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 98
Score = 73.3 bits (172), Expect = 4e-12
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGH-EYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIR 254
P+ F+ SL K +++KLKW + EY G L+S D MN+ L+ T E V G G +G+V+IR
Sbjct: 9 PQKFMESLLNKQIVIKLKWENIEYVGTLISFDERMNIHLSETSEYVGGKTEGVMGDVIIR 68
Query: 255 CNNVLYVR 278
CNN+L++R
Sbjct: 69 CNNILHIR 76
>UniRef50_Q758M9 Cluster: AEL274Cp; n=1; Eremothecium gossypii|Rep:
AEL274Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 86
Score = 72.1 bits (169), Expect = 1e-11
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +3
Query: 69 PINPKPFLNSLTGKSVLVKLKWGH-EYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEV 245
P NPKPFL L + ++V LK+ + Y+G L+STD Y N++L EE + G +G++
Sbjct: 6 PTNPKPFLRQLVDQYIVVTLKFNNTRYRGKLMSTDNYFNIRLTEAEEFIGDVSKGMVGDL 65
Query: 246 LIRCNNVLYV 275
IRCNNVL++
Sbjct: 66 FIRCNNVLWI 75
>UniRef50_A4HNB4 Cluster: Sm-f snRNP core complex protein, putative;
n=5; Trypanosomatidae|Rep: Sm-f snRNP core complex
protein, putative - Leishmania braziliensis
Length = 77
Score = 69.3 bits (162), Expect = 7e-11
Identities = 37/69 (53%), Positives = 45/69 (65%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 257
P FL+SL GK VLVK KWG Y+G LVS D +MNLQL + E LGE+L+R
Sbjct: 6 PGAFLHSLVGKKVLVKSKWGPVYEGNLVSCDTFMNLQLRDAVE--HAKQDTELGEMLLRN 63
Query: 258 NNVLYVRGA 284
NN+LY+R A
Sbjct: 64 NNILYIREA 72
>UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=22; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Homo sapiens (Human)
Length = 80
Score = 68.9 bits (161), Expect = 9e-11
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 257
P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 258 NNVLYV 275
NNVLY+
Sbjct: 68 NNVLYI 73
>UniRef50_A7EAP1 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Sclerotinia sclerotiorum 1980
Length = 223
Score = 68.5 bits (160), Expect = 1e-10
Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Frame = +3
Query: 66 MPINPKPFLNSLTGKSVLVKLKWGH--EYKGLLVSTDGYMNLQLANTEELVDGTCT 227
+PINP+PFL +L + V+++LKWG EYKG LVS D YMN+QL+ EE +D T
Sbjct: 149 VPINPRPFLQNLVNEEVIIRLKWGGQTEYKGKLVSIDSYMNIQLSGAEEWIDSEMT 204
>UniRef50_Q8SS46 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN F; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN F - Encephalitozoon cuniculi
Length = 81
Score = 64.1 bits (149), Expect = 3e-09
Identities = 30/64 (46%), Positives = 40/64 (62%)
Frame = +3
Query: 75 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIR 254
NPK FL + +SV V LKWG Y+G LV++D Y N+ L E +G + +GEV IR
Sbjct: 13 NPKQFLQRMKNRSVRVALKWGQVYEGTLVASDNYFNILLDECTER-EGEASVKIGEVSIR 71
Query: 255 CNNV 266
CNN+
Sbjct: 72 CNNI 75
>UniRef50_Q4N728 Cluster: U6 small nuclear ribonucleoprotein,
putative; n=3; Aconoidasida|Rep: U6 small nuclear
ribonucleoprotein, putative - Theileria parva
Length = 77
Score = 62.9 bits (146), Expect = 6e-09
Identities = 30/66 (45%), Positives = 40/66 (60%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 257
P ++ S+T K VLVKL G ++KG L S D MNL + NT E +DG + G+ IR
Sbjct: 6 PSAYITSITRKPVLVKLNNGSDFKGTLASLDERMNLAMENTCEFLDGVMVKSYGDAFIRG 65
Query: 258 NNVLYV 275
NNV Y+
Sbjct: 66 NNVYYI 71
>UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 67
Score = 60.9 bits (141), Expect = 2e-08
Identities = 28/48 (58%), Positives = 34/48 (70%)
Frame = +3
Query: 144 YKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNNVLYVRGAD 287
YKG LVS D YMN+ L + EE +D T G LG+V IRCNNVLY+ A+
Sbjct: 3 YKGTLVSFDEYMNILLNDCEEWIDNTKKGTLGKVFIRCNNVLYISRAE 50
>UniRef50_A1CE19 Cluster: LSM domain protein; n=3;
Trichocomaceae|Rep: LSM domain protein - Aspergillus
clavatus
Length = 108
Score = 60.9 bits (141), Expect = 2e-08
Identities = 30/66 (45%), Positives = 39/66 (59%)
Frame = +3
Query: 75 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIR 254
+P FL+ + G V VKL G YKG L S DGYMN+ L ++E +DG + G+ IR
Sbjct: 10 DPSAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRRSYGDAFIR 69
Query: 255 CNNVLY 272
NN LY
Sbjct: 70 GNNGLY 75
>UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=2; Pezizomycotina|Rep: U6 snRNA-associated Sm-like
protein LSm6 - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 83
Score = 60.5 bits (140), Expect = 3e-08
Identities = 30/67 (44%), Positives = 38/67 (56%)
Frame = +3
Query: 75 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIR 254
+P FL + G V VKL G YKG L S DGYMN+ L EE V G + G+ +R
Sbjct: 13 DPTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVR 72
Query: 255 CNNVLYV 275
NNV+Y+
Sbjct: 73 GNNVMYI 79
>UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albicans
CaLSM6; n=3; Ascomycota|Rep: Similar to CA5853|CaLSM6
Candida albicans CaLSM6 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 84
Score = 59.3 bits (137), Expect = 7e-08
Identities = 31/62 (50%), Positives = 37/62 (59%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 257
P FL+ + G SV V+L G EY G L S DGYMN+ L T+E V G N G+V IR
Sbjct: 17 PSVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGDVFIRG 76
Query: 258 NN 263
NN
Sbjct: 77 NN 78
>UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2;
Thermoprotei|Rep: Small nuclear ribonucleoprotein -
Cenarchaeum symbiosum
Length = 106
Score = 59.3 bits (137), Expect = 7e-08
Identities = 29/67 (43%), Positives = 39/67 (58%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 257
P L T K+V V+LK EYKG + + D YMNL + + EE D N G V++R
Sbjct: 35 PLTALQKSTKKAVTVRLKNETEYKGKMENVDSYMNLIMTDAEEFHDSKVVANYGRVIVRG 94
Query: 258 NNVLYVR 278
NNVL++R
Sbjct: 95 NNVLFIR 101
>UniRef50_Q5K712 Cluster: U6 snRNA-associated sm-like protein lsm6,
putative; n=1; Filobasidiella neoformans|Rep: U6
snRNA-associated sm-like protein lsm6, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 88
Score = 58.8 bits (136), Expect = 9e-08
Identities = 28/67 (41%), Positives = 38/67 (56%)
Frame = +3
Query: 75 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIR 254
+P FL ++ GK V V++ G +Y GLL DGYMN+ L EE T G+ +R
Sbjct: 16 SPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGDCFLR 75
Query: 255 CNNVLYV 275
NNVLY+
Sbjct: 76 GNNVLYI 82
>UniRef50_Q3LWJ8 Cluster: MRNA splicing factor snRNP-F; n=1;
Bigelowiella natans|Rep: MRNA splicing factor snRNP-F -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 78
Score = 58.4 bits (135), Expect = 1e-07
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = +3
Query: 75 NPKPFLNSLTGKSVLVK-LKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 251
NPKPFL +L G+ + + + + + G+LVS D +MN+Q+ NT E + G G +GE+ +
Sbjct: 6 NPKPFLKNLVGEKITIYVILKDYSFNGILVSFDSWMNIQMFNTNESIKGMNIGPIGEIFL 65
Query: 252 RCN 260
+C+
Sbjct: 66 KCS 68
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 57.6 bits (133), Expect = 2e-07
Identities = 29/66 (43%), Positives = 41/66 (62%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 257
P L + V++KLK E++G+L S D +MNL L + EEL DG T LG VLIR
Sbjct: 14 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRG 73
Query: 258 NNVLYV 275
+N++Y+
Sbjct: 74 DNIVYI 79
>UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4;
Thermoplasmatales|Rep: Putative snRNP Sm-like protein -
Thermoplasma acidophilum
Length = 83
Score = 55.6 bits (128), Expect = 9e-07
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +3
Query: 69 PINPKPF--LNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGE 242
P N KP L S ++VL+ +K EY G+L D YMN+ L N E+++G G
Sbjct: 5 PANVKPMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGVYDR 64
Query: 243 VLIRCNNVLYV 275
VL+R +NV++V
Sbjct: 65 VLVRGDNVIFV 75
>UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear
ribonucleoprotein; n=2; Thermoprotei|Rep: 90aa long
hypothetical small nuclear ribonucleoprotein -
Sulfolobus tokodaii
Length = 90
Score = 55.2 bits (127), Expect = 1e-06
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Frame = +3
Query: 75 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTC--TGNLGEVL 248
NP L + T K VLVKLK G EY G L +DG MNL L + E +GT G VL
Sbjct: 12 NPLKSLKTATNKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDCIETREGTAEPVAKYGRVL 71
Query: 249 IRCNNVLYV 275
IR +N+L++
Sbjct: 72 IRGSNILFI 80
>UniRef50_Q7RMQ6 Cluster: Putative uncharacterized protein PY02122;
n=1; Plasmodium yoelii yoelii|Rep: Putative
uncharacterized protein PY02122 - Plasmodium yoelii
yoelii
Length = 81
Score = 54.8 bits (126), Expect = 2e-06
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = +3
Query: 69 PINPKPFLNSLTGKSVLVKLKWGHEYKGL 155
P+NPKPFLNSL G V++KLKWG EYKG+
Sbjct: 51 PLNPKPFLNSLVGNRVIIKLKWGMEYKGI 79
>UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep:
Sm-like protein - Sulfolobus acidocaldarius
Length = 87
Score = 53.6 bits (123), Expect = 4e-06
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +3
Query: 75 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTC--TGNLGEVL 248
NP L + K VLVKLK G EY G L +DG MNL L + E +GT G VL
Sbjct: 7 NPLKSLKTALNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKDCTEYREGTSDPVAKYGRVL 66
Query: 249 IRCNNVLYV 275
IR +N+L++
Sbjct: 67 IRGSNILFI 75
>UniRef50_A7ARJ0 Cluster: Small nuclear ribonucleoprotein F,
putative; n=1; Babesia bovis|Rep: Small nuclear
ribonucleoprotein F, putative - Babesia bovis
Length = 83
Score = 52.4 bits (120), Expect = 8e-06
Identities = 26/62 (41%), Positives = 36/62 (58%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 257
P ++ ++T K V+VKL G ++GLL S D MNL + NT+E DG G+ IR
Sbjct: 6 PSSYIANITRKPVIVKLNNGTRFRGLLSSLDDRMNLAMENTKEYCDGELVKAYGDSFIRG 65
Query: 258 NN 263
NN
Sbjct: 66 NN 67
>UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10;
Archaea|Rep: Putative snRNP Sm-like protein -
Archaeoglobus fulgidus
Length = 77
Score = 52.4 bits (120), Expect = 8e-06
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = +3
Query: 66 MPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEV 245
MP P LN V+V+LK G E++G L D +MNL L + EE+ +G +G V
Sbjct: 1 MPPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSV 60
Query: 246 LIRCNNVLYVRGA 284
+IR + V++V A
Sbjct: 61 VIRGDTVVFVSPA 73
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 51.6 bits (118), Expect = 1e-05
Identities = 26/62 (41%), Positives = 39/62 (62%)
Frame = +3
Query: 90 LNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNNVL 269
L GK VLVKL+ HE +G+L S D ++NL L + EE++DG G +++R NVL
Sbjct: 16 LQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGN-VYKRGTMVVRGENVL 74
Query: 270 YV 275
++
Sbjct: 75 FI 76
>UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Thermofilum pendens Hrk 5|Rep: Like-Sm
ribonucleoprotein, core - Thermofilum pendens (strain
Hrk 5)
Length = 100
Score = 51.6 bits (118), Expect = 1e-05
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 72 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVD-GTCTGNLGEVL 248
+ P L + +GK V VKLK G EY G L TD MNL L + +EL + LG V
Sbjct: 1 MQPIEHLRNQSGKGVFVKLKDGSEYMGKLRMTDAAMNLVLDDAKELTETNKVVAQLGTVF 60
Query: 249 IRCNNVLYV 275
IR +N+L+V
Sbjct: 61 IRGSNLLFV 69
>UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Pyrococcus furiosus
Length = 76
Score = 50.8 bits (116), Expect = 3e-05
Identities = 27/70 (38%), Positives = 40/70 (57%)
Frame = +3
Query: 66 MPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEV 245
M P ++ K VLV LK G E++G L+ D ++N+ LAN E L DG G++
Sbjct: 1 MAERPLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANAELLQDGEVVKKYGKI 60
Query: 246 LIRCNNVLYV 275
+IR +NVL +
Sbjct: 61 VIRGDNVLAI 70
>UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Staphylothermus marinus F1|Rep: Like-Sm
ribonucleoprotein, core - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 91
Score = 50.0 bits (114), Expect = 4e-05
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEEL-VDGTCTGNLGEVLIR 254
P +L S + VLVK+K GHEY G L D MN+ L+N +E DG G+VLIR
Sbjct: 11 PLKYLKSAVNQIVLVKIKDGHEYIGTLNMVDHTMNVVLSNCQEYGDDGKPIARYGKVLIR 70
Query: 255 CNNVLYV 275
++++++
Sbjct: 71 GSHIVFI 77
>UniRef50_A7F5M4 Cluster: Putative uncharacterized protein; n=4;
Pezizomycotina|Rep: Putative uncharacterized protein -
Sclerotinia sclerotiorum 1980
Length = 95
Score = 49.6 bits (113), Expect = 6e-05
Identities = 26/63 (41%), Positives = 34/63 (53%)
Frame = +3
Query: 75 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIR 254
+P FL+ + G V+VKL +KG L S DGYMN+ L EE V G G+ +R
Sbjct: 13 DPSSFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVR 72
Query: 255 CNN 263
NN
Sbjct: 73 GNN 75
>UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 80
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/59 (42%), Positives = 37/59 (62%)
Frame = +3
Query: 99 LTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNNVLYV 275
L + VL+ LK G E KG+L D +MNL L EE+V G ++G ++IR +NV+Y+
Sbjct: 18 LNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKAEEIVQGQAQ-SIGTLIIRGDNVIYI 75
>UniRef50_UPI00015BACE3 Cluster: Like-Sm ribonucleoprotein, core;
n=1; Ignicoccus hospitalis KIN4/I|Rep: Like-Sm
ribonucleoprotein, core - Ignicoccus hospitalis KIN4/I
Length = 91
Score = 46.8 bits (106), Expect = 4e-04
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 75 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEEL--VDGTCTGNLGEVL 248
NP +L + VLV+LK G+EY G LV TD MNL L + EL G G ++
Sbjct: 14 NPLKYLRAAVDNVVLVRLKDGNEYVGKLVFTDNTMNLILDDCTELSPETGEPVAKYGRIM 73
Query: 249 IRCNNVLYV 275
IR + VL++
Sbjct: 74 IRGSYVLFI 82
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 45.6 bits (103), Expect = 0.001
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 72 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVD-GT-CTGNLGEV 245
+NP +L + VKLK G EY G LV+TD MNL L + E+ D GT +G V
Sbjct: 10 VNPFKYLKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIEVADNGTRLVAKIGRV 69
Query: 246 LIRCNNVLYV 275
LI+ + V ++
Sbjct: 70 LIKGSMVEFI 79
>UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protein -
Methanosarcina acetivorans
Length = 74
Score = 45.2 bits (102), Expect = 0.001
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWG-HEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIR 254
P + + G + V++K + +G L S D YMNL L +T E+V G +LG V++R
Sbjct: 3 PNKKVQKIVGSRIRVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVRGEKVRSLGSVVLR 62
Query: 255 CNNVLYV 275
NN++ +
Sbjct: 63 GNNIILI 69
>UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Caldivirga maquilingensis IC-167|Rep: Like-Sm
ribonucleoprotein, core - Caldivirga maquilingensis
IC-167
Length = 86
Score = 44.4 bits (100), Expect = 0.002
Identities = 30/70 (42%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 72 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGT--CTGNLGEV 245
+ P L + KSV+VKLK G G L D MN+ L + EEL T G+V
Sbjct: 10 VQPLRALGMMVNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEELDTRTNQVIVRYGKV 69
Query: 246 LIRCNNVLYV 275
LIR N VLYV
Sbjct: 70 LIRGNQVLYV 79
>UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus
fulgidus|Rep: SnRNP, putative - Archaeoglobus fulgidus
Length = 75
Score = 43.6 bits (98), Expect = 0.004
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYK--GLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 251
P + S+ GK + V++K G E + G L D YMNL L N E +LGE+++
Sbjct: 4 PNQMVKSMVGKIIRVEMK-GEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVL 62
Query: 252 RCNNVLYVR 278
R NNV+ ++
Sbjct: 63 RGNNVVLIQ 71
>UniRef50_Q00UL7 Cluster: Putative Sm protein F; n=1; Ostreococcus
tauri|Rep: Putative Sm protein F - Ostreococcus tauri
Length = 173
Score = 42.7 bits (96), Expect = 0.007
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +3
Query: 12 RTRSEADTF*EPAKMAAAMPINPKPFLNSLTGKSVLVKLKWGHEYK--------GLLVST 167
RTR+ A A + ++P FL ++ GK+VLV+L G +Y+ G+L
Sbjct: 33 RTRARAVDRPAMAPGSGTSGVSPSDFLRAIEGKTVLVRLNSGADYRGARSRRSIGVLACL 92
Query: 168 DGYMNLQLANTEE 206
DGYMN+ + TE+
Sbjct: 93 DGYMNIAMEQTED 105
>UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 187
Score = 42.7 bits (96), Expect = 0.007
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 90 LNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLAN-TEELVDGTCTGNLGEVLIRCNNV 266
L + TG +LV+LK G GLLV+ D +MNL L + DG L E+ +R + +
Sbjct: 67 LTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGSTI 126
Query: 267 LYVRGAD 287
Y+R D
Sbjct: 127 KYLRVPD 133
>UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog;
n=4; Pyrobaculum|Rep: Small nuclear ribonucleoprotein
homolog - Pyrobaculum aerophilum
Length = 85
Score = 42.7 bits (96), Expect = 0.007
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 75 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEEL-VDGTCTGNLGEVLI 251
+P L + K ++ +LK G KG+L + DG MNL L + EL G G ++I
Sbjct: 11 SPIKVLTKMLNKEIIARLKGGVAVKGVLTAYDGCMNLVLNDAAELDKSGEPKTRYGRIVI 70
Query: 252 RCNNVLYV 275
R + V+YV
Sbjct: 71 RGSQVIYV 78
>UniRef50_A6S1F2 Cluster: Putative uncharacterized protein; n=3;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 690
Score = 42.3 bits (95), Expect = 0.009
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLAN-TEELVDGTCTGNLGEVLIR 254
P L + G +LV+LK G G LVS D +MNL L + DG L E+ ++
Sbjct: 4 PLGLLTAAQGHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYVK 63
Query: 255 CNNVLYVRGAD 287
NN+ Y+R D
Sbjct: 64 GNNIKYLRMPD 74
>UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)
homolog; n=1; Methanopyrus kandleri|Rep: Small nuclear
ribonucleoprotein (SnRNP) homolog - Methanopyrus
kandleri
Length = 73
Score = 41.5 bits (93), Expect = 0.015
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +3
Query: 72 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 251
+ P L V+V+LK G +G LVS DG++NL L + E +D LG VLI
Sbjct: 1 MRPHDCLRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDDCVE-IDEDSEVRLGRVLI 59
Query: 252 RCNNVLYVRGAD 287
R ++V + A+
Sbjct: 60 RGDSVTLISPAE 71
>UniRef50_Q06406 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=4; Saccharomycetaceae|Rep: U6 snRNA-associated Sm-like
protein LSm6 - Saccharomyces cerevisiae (Baker's yeast)
Length = 123
Score = 41.5 bits (93), Expect = 0.015
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +3
Query: 87 FLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNNV 266
FL+ + GK+V VKL G Y G L S DG+MN+ L++ E + N ++L + N+
Sbjct: 52 FLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYE----SNNNKLLNKFNSD 107
Query: 267 LYVRG 281
+++RG
Sbjct: 108 VFLRG 112
>UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 85
Score = 41.1 bits (92), Expect = 0.020
Identities = 22/62 (35%), Positives = 33/62 (53%)
Frame = +3
Query: 84 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 263
P L L K + +KL G+L D +MN+ L +T E+V T +G V+IR N+
Sbjct: 9 PDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNS 68
Query: 264 VL 269
+L
Sbjct: 69 IL 70
>UniRef50_A0CSI7 Cluster: Chromosome undetermined scaffold_26, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_26,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 128
Score = 41.1 bits (92), Expect = 0.020
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 72 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEEL-VDGTCTGNLGEVL 248
I P L + G V++++K G Y G L D +MN++L N + DG + E+L
Sbjct: 4 IFPLSLLLTAKGSDVVIEVKAGDTYDGKLELLDKFMNVKLTNVKHTSKDGNSFHGIKELL 63
Query: 249 IRCNNVLYVR 278
I+ N++ Y R
Sbjct: 64 IKGNSIKYFR 73
>UniRef50_Q75BR7 Cluster: ACR204Cp; n=2; Saccharomycetales|Rep:
ACR204Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 85
Score = 40.3 bits (90), Expect = 0.036
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +3
Query: 87 FLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL----GEVLIR 254
FL+++ GK V VKL G Y+G L S DG+MN+ L + E + + +V +R
Sbjct: 16 FLSNIIGKPVNVKLHSGMLYQGTLESIDGFMNVALVDASEYYESEQNPVIHRYESDVFLR 75
Query: 255 CNNVLYV 275
V+Y+
Sbjct: 76 GTQVMYI 82
>UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotein
G; n=14; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein G - Drosophila melanogaster (Fruit
fly)
Length = 76
Score = 39.9 bits (89), Expect = 0.047
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = +3
Query: 84 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 263
P + K +++KL G G+L D +MN+ L +T E N+G V+IR N+
Sbjct: 7 PEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNS 66
Query: 264 VLYVRGAD 287
++ V D
Sbjct: 67 IVMVEALD 74
>UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 177
Score = 39.5 bits (88), Expect = 0.062
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANT-EELVDGTCTGNLGEVLIR 254
P L + G ++V+LK G Y GLLV+ D +MN+ L N D + IR
Sbjct: 3 PLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYIR 62
Query: 255 CNNVLYVRGAD 287
N + Y+ D
Sbjct: 63 GNTIKYISVPD 73
>UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1;
Filobasidiella neoformans|Rep: U6 snRNA binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 131
Score = 39.5 bits (88), Expect = 0.062
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 90 LNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLAN-TEELVDGTCTGNLGEVLIRCNNV 266
L KS+ VK G E G+L D MNL + + EE DG T +LG V++R N+
Sbjct: 29 LAQFVDKSIRVKFMGGREATGILKGYDQLMNLVMDDVVEEYEDGRPTRSLGLVVLRGPNI 88
Query: 267 LYVRGAD 287
+ V D
Sbjct: 89 VLVSPTD 95
>UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_27, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 281
Score = 39.1 bits (87), Expect = 0.082
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 254
P L + G +LV+LK G Y G LV+ D +MN+ L DG + E IR
Sbjct: 89 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 148
Query: 255 CNNVLYVRGAD 287
N + Y+R D
Sbjct: 149 GNTIKYLRVPD 159
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 39.1 bits (87), Expect = 0.082
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +3
Query: 90 LNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEEL-VDGTCTGNLGEVLIRCNNV 266
L+ + VL+KLK +G L+ D +MNL L ++EE+ +G G LG +++R +NV
Sbjct: 10 LDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAEGEAKG-LGSIVVRGDNV 68
Query: 267 LYV 275
+ +
Sbjct: 69 VMI 71
>UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm4; n=5; Eukaryota|Rep: Probable U6
snRNA-associated Sm-like protein LSm4 - Oryza sativa
subsp. japonica (Rice)
Length = 147
Score = 39.1 bits (87), Expect = 0.082
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 254
P L + G +LV+LK G Y G LV+ D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIR 62
Query: 255 CNNVLYVRGAD 287
N + Y+R D
Sbjct: 63 GNTIKYLRVPD 73
>UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46;
Eukaryota|Rep: Small nuclear ribonucleoprotein G - Homo
sapiens (Human)
Length = 76
Score = 37.9 bits (84), Expect = 0.19
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 84 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 263
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 264 VLYVRGAD 287
++ + +
Sbjct: 67 IIMLEALE 74
>UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein
polypeptide G; n=1; Hyacinthus orientalis|Rep: Small
nuclear ribonucleoprotein polypeptide G - Hyacinthus
orientalis (Common hyacinth)
Length = 96
Score = 37.5 bits (83), Expect = 0.25
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 45 PAKMAAAMPINPKPFLNSLTGKSVL-VKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGT 221
PA AAA P L + G S L +KL G L D +MNL + NT E V+G
Sbjct: 12 PAHHAAAS--GQPPALKQVHGTSKLQIKLNANRVVVGTLRGFDQFMNLVIDNTME-VNGN 68
Query: 222 CTGNLGEVLIRCNNVLYVRGAD 287
++G V+IR N+V+ + +
Sbjct: 69 DKNDIGMVVIRGNSVVMIEALE 90
>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
Aeropyrum pernix
Length = 77
Score = 37.5 bits (83), Expect = 0.25
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +3
Query: 114 VLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNNVLYVRGA 284
VLVKLK G KG+L + D ++N+ L + EE+ + T LG L+R ++V+ + A
Sbjct: 21 VLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIGE-TSIRRLGLTLVRGDSVVVITPA 76
>UniRef50_Q7QVJ0 Cluster: GLP_21_27536_27300; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_21_27536_27300 - Giardia lamblia
ATCC 50803
Length = 78
Score = 37.1 bits (82), Expect = 0.33
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +3
Query: 87 FLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNNV 266
++ SL VLV+L G +GL +S D N+ L + GT L E+LIR N++
Sbjct: 7 YVQSLISTHVLVRLDNGATARGLTISIDDRCNVLLVDC-TYTSGTQKSFLNEMLIRSNHI 65
Query: 267 LYV 275
L++
Sbjct: 66 LFM 68
>UniRef50_Q4UBR6 Cluster: U6 snrna-associated sm-like protein lsm4,
putative; n=1; Theileria annulata|Rep: U6
snrna-associated sm-like protein lsm4, putative -
Theileria annulata
Length = 105
Score = 37.1 bits (82), Expect = 0.33
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 254
P L + + L++LK G Y G+L S D +MN+ + N GT L E IR
Sbjct: 4 PLTLLRAGKSQPTLIELKNGETYSGILDSCDAFMNMHMVNVVCTSKSGTDFWKLDECFIR 63
Query: 255 CNNVLYVR 278
N V +R
Sbjct: 64 GNTVKSLR 71
>UniRef50_Q4MZK0 Cluster: U6 snRNA-associated protein, putative;
n=1; Theileria parva|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 141
Score = 37.1 bits (82), Expect = 0.33
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 254
P L + + L++LK G Y G+L S D +MN+ + N GT L E IR
Sbjct: 4 PLTLLRAGKSQPTLIELKNGETYSGILDSCDAFMNMHMVNVVCTSKSGTDFWKLDECFIR 63
Query: 255 CNNVLYVR 278
N V +R
Sbjct: 64 GNTVKSLR 71
>UniRef50_Q8SRW7 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN G; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN G - Encephalitozoon cuniculi
Length = 78
Score = 36.7 bits (81), Expect = 0.44
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +3
Query: 84 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE 206
P L SL K ++V++ GH KGLL D +MN+ L+ E
Sbjct: 7 PNLASLLHKRIVVRIGGGHTLKGLLTGYDAFMNIVLSEVTE 47
>UniRef50_Q2FM21 Cluster: Like-Sm ribonucleoprotein, core; n=4;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 79
Score = 35.9 bits (79), Expect = 0.77
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +3
Query: 111 SVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNNVLYV 275
SV +K G ++G LV+ D Y+NL L + E LG ++IR NN+L +
Sbjct: 21 SVEMKEDEGRTFQGRLVAVDEYLNLHLEESIETSGKNKGRELGTLVIRGNNILSI 75
>UniRef50_Q9QXA5 Cluster: U6 snRNA-associated Sm-like protein LSm4;
n=128; Eukaryota|Rep: U6 snRNA-associated Sm-like
protein LSm4 - Mus musculus (Mouse)
Length = 137
Score = 35.9 bits (79), Expect = 0.77
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 254
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 255 CNNVLYVRGAD 287
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>UniRef50_Q9Y4Z0 Cluster: U6 snRNA-associated Sm-like protein LSm4;
n=5; Coelomata|Rep: U6 snRNA-associated Sm-like protein
LSm4 - Homo sapiens (Human)
Length = 139
Score = 35.9 bits (79), Expect = 0.77
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 254
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 255 CNNVLYVRGAD 287
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>UniRef50_UPI000156133C Cluster: PREDICTED: similar to LSM4 homolog,
U6 small nuclear RNA associated (S. cerevisiae); n=1;
Equus caballus|Rep: PREDICTED: similar to LSM4 homolog,
U6 small nuclear RNA associated (S. cerevisiae) - Equus
caballus
Length = 196
Score = 35.5 bits (78), Expect = 1.0
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +3
Query: 45 PAKMAAAMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 191
PA A + P L + +LV+LK G Y G LVS D +MN+ L
Sbjct: 37 PASSVPADTMLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 85
>UniRef50_Q8ZVU2 Cluster: Small nuclear ribonucleoprotein homolog;
n=4; Pyrobaculum|Rep: Small nuclear ribonucleoprotein
homolog - Pyrobaculum aerophilum
Length = 144
Score = 35.5 bits (78), Expect = 1.0
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 90 LNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLAN 197
LN+L G+ V V L G YKG+L + D +N+ LAN
Sbjct: 16 LNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLAN 51
>UniRef50_UPI0000499412 Cluster: U6 snRNA-associated Sm-like
protein; n=1; Entamoeba histolytica HM-1:IMSS|Rep: U6
snRNA-associated Sm-like protein - Entamoeba histolytica
HM-1:IMSS
Length = 71
Score = 35.1 bits (77), Expect = 1.3
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +3
Query: 120 VKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 263
+KL G +KG + DG MN+ L N E ++G E IR NN
Sbjct: 23 IKLNDGTIFKGKMTLIDGLMNIVLENAIEYINGNKDNEYPECFIRGNN 70
>UniRef50_Q976F1 Cluster: 86aa long hypothetical NADH dehydrogenase
subunit I; n=1; Sulfolobus tokodaii|Rep: 86aa long
hypothetical NADH dehydrogenase subunit I - Sulfolobus
tokodaii
Length = 86
Score = 35.1 bits (77), Expect = 1.3
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -1
Query: 262 LLHLIKTSPKLPV--QVPSTSSSVLASCKFM*PSVDTNKPLYS*PHFNLTSTDLPVRLLR 89
LL LI+T P VPS S S KF+ PS+ +N P YS P + T+T L V + +
Sbjct: 5 LLPLIRTLPYFATGSAVPSLVSIQSLSTKFIVPSLCSNLPTYSDPSLSFTNTILFVAVFK 64
>UniRef50_A1ZD45 Cluster: Secreted enzyme, contains two
amidohydrolase related domains; n=1; Microscilla marina
ATCC 23134|Rep: Secreted enzyme, contains two
amidohydrolase related domains - Microscilla marina ATCC
23134
Length = 1022
Score = 34.7 bits (76), Expect = 1.8
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 93 NSLTGKSVLVKLKWGHEYKGLLV-STDGYMNLQL 191
N + G+S L+KLKWG + LL+ TDGY+ L
Sbjct: 682 NPVGGQSALIKLKWGEAPEKLLIPGTDGYIKFAL 715
>UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Guillardia theta|Rep: Putative small nuclear
ribonucleoprotein E - Guillardia theta (Cryptomonas phi)
Length = 78
Score = 34.7 bits (76), Expect = 1.8
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +3
Query: 114 VLVKLKWGHEY--KGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNNVLYV 275
V + K ++Y +G L+ D +MNL + NT E D +LG VLI+ +++L +
Sbjct: 18 VTIIFKGSNDYILEGNLIGFDEFMNLVIENTTEKKDSLIVRDLGYVLIKGDSILTI 73
>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
Thermoplasma volcanium
Length = 71
Score = 34.3 bits (75), Expect = 2.3
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +3
Query: 72 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 251
I P L K V + LK +G L D YMN+ L + +E + + LG V+I
Sbjct: 2 IMPMKLLEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDENSENV-SRKLGTVVI 60
Query: 252 RCNNVLYV 275
R +NV+ +
Sbjct: 61 RGSNVVRI 68
>UniRef50_P40070 Cluster: U6 snRNA-associated Sm-like protein LSm4;
n=3; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm4 - Saccharomyces cerevisiae (Baker's yeast)
Length = 187
Score = 33.5 bits (73), Expect = 4.1
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE 206
P L + G+ + ++LK G +G+L + D +MNL L+N E
Sbjct: 3 PLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTE 45
>UniRef50_A7TI36 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 193
Score = 33.1 bits (72), Expect = 5.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLAN 197
P L + G+ + ++LK G KG+L + D +MNL L++
Sbjct: 3 PLYLLTNAKGQKITIELKNGETIKGVLTNVDNWMNLTLSD 42
>UniRef50_Q1E7Q6 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 178
Score = 32.7 bits (71), Expect = 7.1
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 87 FLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE 203
F +LT +V+++LK +G+L S D Y+N++L + E
Sbjct: 86 FFKTLTNHTVIIELKNDIRIRGILKSVDQYLNIKLDDIE 124
>UniRef50_P43321 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=11; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein Sm D3 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 101
Score = 32.7 bits (71), Expect = 7.1
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +3
Query: 78 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 257
P LN G V ++L G Y+G LV ++ MN+QL + ++ ++ +R
Sbjct: 7 PVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFVRG 66
Query: 258 NNVLYV 275
+ + ++
Sbjct: 67 SQIKFI 72
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,678,339
Number of Sequences: 1657284
Number of extensions: 7911068
Number of successful extensions: 17442
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 16976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17423
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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