Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I01
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac...   114   1e-26
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    77   2e-15
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    48   1e-06
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    30   0.23 
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    27   1.6  
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    26   5.0  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   8.7  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   8.7  

>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
           Smf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 78

 Score =  114 bits (274), Expect = 1e-26
 Identities = 51/70 (72%), Positives = 57/70 (81%)
 Frame = +3

Query: 66  MPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEV 245
           +P+NPKPFL  L GK VLV+LKWG EYKG L S D YMNLQL N EELVDG  TG+LGE+
Sbjct: 4   VPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEI 63

Query: 246 LIRCNNVLYV 275
           LIRCNNVL+V
Sbjct: 64  LIRCNNVLWV 73


>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 38/74 (51%), Positives = 46/74 (62%)
 Frame = +3

Query: 66  MPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEV 245
           M  +P  FLN + GK VL++L  G +YKG+L   DGYMNL L  TEE V+G  T   G+ 
Sbjct: 1   MDSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDA 60

Query: 246 LIRCNNVLYVRGAD 287
            IR NNVLYV   D
Sbjct: 61  FIRGNNVLYVSALD 74


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 78  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANT-EELVDGTCTGNLGEVLIR 254
           P   LN+  G+ +LV+LK G  + G L + D YMNL L      + DG     L E  IR
Sbjct: 3   PLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIR 62

Query: 255 CNNVLYVRGAD 287
            NN+ Y+R  D
Sbjct: 63  GNNIKYLRIQD 73


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +3

Query: 96  SLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE 206
           SL   S+ V  K G  + G L++ DG+MNL L++ +E
Sbjct: 8   SLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQE 44


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 114 VLVKLKWGHEYKGLLVSTDGYMNLQLANTEELV 212
           V VKL+   E  G L + D ++N+ L + EE+V
Sbjct: 22  VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIV 54


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = +3

Query: 135 GHEYKGLLVSTDGYMNLQLANTEELV----DGTCTG---NLGEVLIRCNNVLYVRGAD 287
           G +  G+L   D  MNL L + EE +    DG  TG    LG V++R   ++ +   D
Sbjct: 43  GRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMD 100


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 274 TYKTLLHLIKTSPKLPVQVP--STSSSVLASCKFM*PSVDTNKPLY 143
           +Y TL+  +  SP L V     ST+SS+ ++C    PSV ++ P Y
Sbjct: 286 SYTTLVSQLPPSPCLTVSSGPLSTASSIPSNCSC--PSVKSSGPSY 329


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +1

Query: 382 ILSKKIEISYYSVSSKITLGIYPEILMI 465
           +LSK +++  ++V   +++GI+P +L +
Sbjct: 510 LLSKFLDLGVWAVDLALSIGIFPYVLKL 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,876
Number of Sequences: 5004
Number of extensions: 36867
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)