Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I01
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427...   128   3e-30
11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460...   117   9e-27
04_03_0736 - 19145428-19145474,19145608-19145721,19146707-191478...    48   6e-06
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856...    39   0.003
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488...    35   0.059
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852...    33   0.24 
02_03_0379 - 18331549-18331595,18331676-18331751                       31   0.96 
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296...    29   3.9  
03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996...    28   6.8  

>02_01_0576 -
           4270808-4270871,4271548-4271612,4271717-4271754,
           4272060-4272147,4272507-4272625,4273682-4273721
          Length = 137

 Score =  128 bits (310), Expect = 3e-30
 Identities = 56/72 (77%), Positives = 64/72 (88%)
 Frame = +3

Query: 66  MPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEV 245
           +P+NPKPFLN+LTGK V+VKLKWG EYKG LVS D YMNLQLANTEE +DG  +GNLGE+
Sbjct: 55  VPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEI 114

Query: 246 LIRCNNVLYVRG 281
           LIRCNNVLY+RG
Sbjct: 115 LIRCNNVLYLRG 126


>11_06_0609 +
           25444941-25444946,25445678-25445765,25446013-25446048,
           25446069-25446106,25446219-25446283,25446622-25446685
          Length = 98

 Score =  117 bits (281), Expect = 9e-27
 Identities = 57/86 (66%), Positives = 65/86 (75%), Gaps = 12/86 (13%)
 Frame = +3

Query: 60  AAMPINPKPFLNSLTGKSVLVKLKWGHEYK------------GLLVSTDGYMNLQLANTE 203
           A +P+NPKPFLN+LTGK V+VKLKWG EYK            G LVS D YMNLQLANTE
Sbjct: 2   ATVPVNPKPFLNNLTGKPVIVKLKWGMEYKVFRFCLTIDYADGYLVSVDSYMNLQLANTE 61

Query: 204 ELVDGTCTGNLGEVLIRCNNVLYVRG 281
           E +DG  +GNLGE+LIRCNNVLY+RG
Sbjct: 62  EYIDGQFSGNLGEILIRCNNVLYLRG 87


>04_03_0736 -
           19145428-19145474,19145608-19145721,19146707-19147870,
           19150251-19150383
          Length = 485

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = +3

Query: 147 KGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNNVLYV 275
           +G+L   DGYMN+ +  TEE V+G      G+  IR NNVLY+
Sbjct: 432 RGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 474


>01_01_1089 -
           8560008-8560220,8560456-8560977,8561095-8561283,
           8561377-8561642,8561967-8562111,8562411-8562530,
           8562611-8562930,8564161-8564341,8564434-8564580,
           8565186-8565497,8566303-8566450,8566592-8566765,
           8567385-8567446,8567499-8567571,8567628-8567683,
           8568370-8568645,8569541-8569588,8569870-8569991,
           8570258-8570413,8571037-8571079,8572624-8572701,
           8572972-8573070,8573168-8573209,8573302-8573304
          Length = 1264

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 78  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 254
           P   L +  G  +LV+LK G  Y G LV+ D +MN+ L        DG     + E  IR
Sbjct: 3   PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIR 62

Query: 255 CNNVLYVRGAD 287
            N + Y+R  D
Sbjct: 63  GNTIKYLRVPD 73


>03_04_0043 +
           16747103-16747137,16747237-16747259,16748735-16748856,
           16748980-16749042
          Length = 80

 Score = 34.7 bits (76), Expect = 0.059
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = +3

Query: 84  PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 263
           P L     K + +KL       G L   D +MNL + NT E V+G    ++G V++R N+
Sbjct: 8   PDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVVRGNS 66

Query: 264 VLYVRGAD 287
           V+ +   +
Sbjct: 67  VVMIEALE 74


>07_03_1222 -
           24983294-24983356,24983695-24983858,24985209-24985231,
           24985340-24985374
          Length = 94

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 96  SLTGKSVL-VKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNNVLY 272
           S T  S+L VKL       G L   D +MNL + NT E V+G    ++G V+IR N+V+ 
Sbjct: 25  SFTLFSILPVKLNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNEKNDIGMVVIRGNSVVM 83

Query: 273 VRGAD 287
           +   +
Sbjct: 84  IEALE 88


>02_03_0379 - 18331549-18331595,18331676-18331751
          Length = 40

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 189 LANTEELVDGTCTGNLGEVLIRCNNVLYV 275
           +  TEE V+G      G+  IR NNVLY+
Sbjct: 1   MEQTEEYVNGQLKNKYGDAFIRGNNVLYI 29


>08_01_0328 +
           2959014-2959055,2959336-2959398,2960871-2960949,
           2961038-2961083,2961566-2961671
          Length = 111

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 147 KGLLVSTDGYMNLQLANTEEL-VDGTCTGNLGEVLIRCNNV 266
           +G ++  D YMNL L + EE+ V      +LG +L++ +N+
Sbjct: 31  EGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNI 71


>03_02_0630 +
           9964593-9964738,9965548-9965603,9965895-9966745,
           9966848-9967046,9967246-9967425,9967591-9967967,
           9968625-9968765
          Length = 649

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 27  ADTF*EPAKMAAAMPINP--KPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANT 200
           A TF  P +     P+ P  +  ++++T    L  L  G   KGLL  +  + +  +   
Sbjct: 418 AQTFGSP-QQPQQNPLLPSIQACIDAITEHQRLNTLMKGELIKGLLPQSSVHADYTVKRV 476

Query: 201 EELVDGTCTGN 233
           +EL +GTC  N
Sbjct: 477 QELAEGTCLKN 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,015,254
Number of Sequences: 37544
Number of extensions: 196765
Number of successful extensions: 453
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)