Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_I01
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...   127   7e-30
AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    70   2e-12
U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like pro...    33   0.12 
AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    30   1.1  
Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z99710-8|CAB16868.1|  383|Caenorhabditis elegans Hypothetical pr...    30   1.5  
EF015633-1|ABK20307.1|  383|Caenorhabditis elegans alpha 1,2-fuc...    30   1.5  
Z49936-2|CAA90181.1|  586|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AY834228-1|AAV91314.1|  589|Caenorhabditis elegans Toll and inte...    29   2.0  
AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G ...    29   2.0  
AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear...    29   2.0  

>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 5 protein.
          Length = 85

 Score =  127 bits (306), Expect = 7e-30
 Identities = 56/78 (71%), Positives = 64/78 (82%)
 Frame = +3

Query: 54  MAAAMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGN 233
           M+A  P+NPKPFLNSLTGK V+ KLKWG EYKG+LV+ D YMNLQLA+ EE +DG   GN
Sbjct: 1   MSAVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGN 60

Query: 234 LGEVLIRCNNVLYVRGAD 287
           LGE+LIRCNNVLYV G D
Sbjct: 61  LGEILIRCNNVLYVGGVD 78


>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/67 (47%), Positives = 41/67 (61%)
 Frame = +3

Query: 75  NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIR 254
           NP  FL  + GK V+VKL  G +Y+G+L   DGYMN+ L  TEE  +G      G+  IR
Sbjct: 6   NPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFIR 65

Query: 255 CNNVLYV 275
            NNVLY+
Sbjct: 66  GNNVLYI 72


>U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like
           protein protein 4 protein.
          Length = 123

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 78  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANT-EELVDGTCTGNLGEVLIR 254
           P   L +     +LV+LK G  Y G L + D +MN+ L +      DG     + E  +R
Sbjct: 4   PLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVR 63

Query: 255 CNNVLYVR 278
            + + Y+R
Sbjct: 64  GSTIKYLR 71


>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +3

Query: 78  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 257
           P   L+   G  V ++   G  Y+G L   +  MN QLA T        +  L  V IR 
Sbjct: 7   PIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRG 66

Query: 258 NNVLYV 275
           N + ++
Sbjct: 67  NKIRFM 72


>Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical
           protein F08A8.5b protein.
          Length = 402

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 379 EILSKKIEISYYSVSSKITLGIYPEILMIEEKNVNWNYCCI 501
           E L++ I+  +  ++ + TL I P+ L+  ++  NW  CC+
Sbjct: 127 ETLNRNIQPLFPKLADQFTLRIIPDSLVTHQQT-NWGRCCV 166


>Z99710-8|CAB16868.1|  383|Caenorhabditis elegans Hypothetical
           protein F08A8.5a protein.
          Length = 383

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 379 EILSKKIEISYYSVSSKITLGIYPEILMIEEKNVNWNYCCI 501
           E L++ I+  +  ++ + TL I P+ L+  ++  NW  CC+
Sbjct: 108 ETLNRNIQPLFPKLADQFTLRIIPDSLVTHQQT-NWGRCCV 147


>EF015633-1|ABK20307.1|  383|Caenorhabditis elegans alpha
           1,2-fucosyltransferase protein.
          Length = 383

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 379 EILSKKIEISYYSVSSKITLGIYPEILMIEEKNVNWNYCCI 501
           E L++ I+  +  ++ + TL I P+ L+  ++  NW  CC+
Sbjct: 108 ETLNRNIQPLFPKLADQFTLRIIPDSLVTHQQT-NWGRCCV 147


>Z49936-2|CAA90181.1|  586|Caenorhabditis elegans Hypothetical
           protein F13B10.1b protein.
          Length = 586

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 241 SPKLPVQVPSTSSSVLASCKFM*PSVDTNKPL 146
           +P +P   PS+S+S+LA  +F  P  + N PL
Sbjct: 98  TPIIPCGSPSSSNSMLAQIQFHPPPTEMNSPL 129


>AY834228-1|AAV91314.1|  589|Caenorhabditis elegans Toll and
           interleukin 1 receptordomain protein isoform f protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 241 SPKLPVQVPSTSSSVLASCKFM*PSVDTNKPL 146
           +P +P   PS+S+S+LA  +F  P  + N PL
Sbjct: 98  TPIIPCGSPSSSNSMLAQIQFHPPPTEMNSPL 129


>AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G
           protein.
          Length = 77

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 84  PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 263
           P L     K + +KL       G+L   D +MN+ +    E      + NLG  +IR N+
Sbjct: 7   PELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGNS 66

Query: 264 VL 269
           V+
Sbjct: 67  VV 68


>AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 7 protein.
          Length = 77

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 84  PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 263
           P L     K + +KL       G+L   D +MN+ +    E      + NLG  +IR N+
Sbjct: 7   PELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGNS 66

Query: 264 VL 269
           V+
Sbjct: 67  VV 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,176,064
Number of Sequences: 27780
Number of extensions: 197189
Number of successful extensions: 525
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)