Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_H23
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...   146   6e-36
Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score =  146 bits (355), Expect = 6e-36
 Identities = 62/90 (68%), Positives = 76/90 (84%)
 Frame = +3

Query: 66  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 245
           MAKRTKKVGI GKYGTRYGASLRKM KK+EV QH++YTCSFCGK+AMKR   GIW+C +C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60

Query: 246 KRTVAGGAWVFSTTAASSCRSAVRRLREVK 335
            + VAGGA+V+ T  A++ RS +RRLR++K
Sbjct: 61  HKVVAGGAYVYGTVTAATVRSTIRRLRDLK 90


>Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical
           protein T13H5.4 protein.
          Length = 500

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 29  FSVNFCIGEVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLLILW 193
           +S   C  + Y+  + +QK +N W+  H +RCL   N     +N T+    L LW
Sbjct: 405 YSCEICGNQTYKGPKAFQKHFNEWRHSHGMRCLGIPN-TSHFANITKIKDALDLW 458


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 162 QHAKYTCSFCGKDAMKRSCVGIWSCKRC 245
           ++ KY C+ C      R   G+WSCK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254


>AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical
           protein F16B4.2a protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 207 KRSCVGIWSCKRCKRTVAGGAWVFSTT 287
           K  C+  W+C  C +T+   +W F +T
Sbjct: 333 KEKCILDWTCSTCDKTIE--SWYFRST 357


>AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical
           protein F16B4.2b protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 207 KRSCVGIWSCKRCKRTVAGGAWVFSTT 287
           K  C+  W+C  C +T+   +W F +T
Sbjct: 338 KEKCILDWTCSTCDKTIE--SWYFRST 362


>AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical
           protein C15F1.5a protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 129 LRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFST 284
           L+K  KKM V   A    S    + M  +C G    + C+R + G A +  T
Sbjct: 32  LKKSTKKMRVCPVAHCYSSLTAPEPMTSTCEG----ENCQRKIMGNAEILRT 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,991,701
Number of Sequences: 27780
Number of extensions: 191210
Number of successful extensions: 600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)