Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_H22
         (817 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.7  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   6.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   8.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 690  PKKALYMVRYHSFYPWHAGGDYKHLLVESDNDI 788
            PK    +V Y + + W+  G  K+L  + D D+
Sbjct: 1819 PKSEFKVVCYFTNWAWYRQGVGKYLPSDIDPDL 1851


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 720 HSFYPWHAGGD 752
           H+FYPW A  D
Sbjct: 203 HTFYPWMAIAD 213


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 654 GTRRGPRTSLSSXDHTSVCTCRVQY 580
           G+R  P    +  D  +VCTC  +Y
Sbjct: 759 GSRFHPFLIPTGFDSCTVCTCDAKY 783


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 108 WPPDAVAGMGRSWRPGNL 55
           WPP+AV  + R    GN+
Sbjct: 2   WPPEAVHSLERFCTYGNV 19


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,793
Number of Sequences: 336
Number of extensions: 5392
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)