Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_H19
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    30   0.43 
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    30   0.43 
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    29   0.76 
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    27   3.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.0  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    26   5.3  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   7.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.3  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   9.3  

>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
 Frame = +1

Query: 286 LIVGTMIGSGIFVSPSGLL--ARTGSVGISFIIWMACXXXXXXXXXXXXXXXTMNTSSGA 459
           + +G+ IG+G+FVS    L  A  GS+ I+FII ++                  N SS  
Sbjct: 77  IAIGSCIGTGLFVSTGKSLKNAGPGSLMINFII-LSAMILALILSLGEMCCFLPNQSSIT 135

Query: 460 EYA--YFMDAFGGPPAFLFSWVSTLVLKPSQMAIIC 561
            Y      +  G   ++L+ W+   VL PS+++  C
Sbjct: 136 MYTGRLLNNNIGFAQSWLYFWIWLTVL-PSEISAAC 170


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 3/116 (2%)
 Frame = +1

Query: 217 GSDAAPDDPVHLKRRVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVGISFIIWMACXX 396
           G    P+D   L+R++       + +G  +G+G+FV     LA  G   I  I +     
Sbjct: 47  GVPLQPEDTQDLQRKLKPRHMQMIAIGGCVGTGLFVGSGNALADGGPASI-LIAFAVIGT 105

Query: 397 XXXXXXXXXXXXXTMNTSSGAEYAY---FMDAFGGPPAFLFSWVSTLVLKPSQMAI 555
                         +   SG+ Y Y   F+D   G    +  W+S  V  P ++ +
Sbjct: 106 YVLFTTSALAELSAIYPVSGSFYTYFSKFIDPAWGFAVGIQYWLSFAVTVPLELTV 161


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 7/181 (3%)
 Frame = +1

Query: 238 DPVHLKRRVGLFSGVALIVGTMIGSGIFVSPSGLLARTG--SVGISFIIWMACXXXXXXX 411
           D V LKR++       + VG  IGSG++V      A  G  SV I++I+           
Sbjct: 69  DGVALKRKLTSRHMQMISVGGAIGSGLYVGSGSAFADGGPASVIINYILIGIMMIFVIYA 128

Query: 412 XXXXXXXXTMNTSSGAEYAYFMDAFGGPPAFLFSW---VSTLVLKPSQMAIICLSFAKYA 582
                    +  S       F+D   G   F  SW   ++  V  P ++    ++F    
Sbjct: 129 LGELAIAYPVAGSFNTYATRFIDPAWG---FAVSWNYFLNYFVTCPLELTTCAITF---- 181

Query: 583 VEPFVAECEPPDSLVKLVAVISIVMILXVNCY-SVNLATNVQNIFTAAKLVAIAIIV-CG 756
              F  E      +   +AV+ ++ +  V  Y  V    +   +      + +AII+ CG
Sbjct: 182 --KFWTEINSAAWISIFLAVVIVINLFGVRAYGEVEFILSTIKVIATVGFIILAIIINCG 239

Query: 757 G 759
           G
Sbjct: 240 G 240


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -1

Query: 419 ASAPSNESRPHAIQMMK--LMPTEPVRAKSPEGDTNIPDPIIVP-TIRATPLKSPT 261
           ASAP  E   +A  + +  + P EP  A  P+G+     P +VP T    P  S T
Sbjct: 239 ASAPDLEKGAYATSVPESYVAPMEPPAAVLPDGEERYATPDLVPDTTAQYPYASAT 294


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -1

Query: 419  ASAPSNESRP--HAIQMMKLMPTE---PVRAKSPEGDTNIPDPIIVP 294
            AS P+N   P  HA Q++   P     PV+ K+P   TN P P   P
Sbjct: 1430 ASQPTNPGAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAP 1476


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = -1

Query: 392 PHAIQMM-KLMPTEPVR----AKSPEGDTNIPDPIIVPTIRATPLKSPTRL 255
           PH    M + +P EP+      K+PE  TNI  P   PT   +  K   RL
Sbjct: 416 PHPTSTMPEALPREPLSFSLPEKAPEKATNISIPESAPTTAGSTCKVKVRL 466


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 127  WRGCSASCDAEDGTTGAFDDGNSNPGDKLEGSDAAPDDPVHLKRRVGLFSGVALIV 294
            W G SA+ +    TTG F  GN+     L  S A  + P+     V LF  +  ++
Sbjct: 1509 WNG-SATYNYTYYTTGGFTGGNNTNVTGLYPSSAGANKPIAYLTFVSLFVYIVTLI 1563


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 452 DDVFIVPNSAYASAPSNESRP 390
           DD F+V N+A +  P++ S+P
Sbjct: 311 DDPFVVSNTANSDEPASSSKP 331


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 226 AAPDDPVHLKRRVGLFSGVALIVGTMIGSGIFVSPSGLLARTG 354
           + P D VH+ +  G FS V  +  T++G+GI   P+    +TG
Sbjct: 9   SGPAD-VHIGK-AGFFSSVINLANTILGAGILSLPNA-FTKTG 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,392,341
Number of Sequences: 5004
Number of extensions: 73262
Number of successful extensions: 216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)