Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_H19
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0177 + 26505956-26506202,26506838-26507247,26507448-265076... 48 1e-05
01_06_1086 - 34421837-34422311,34422426-34422612,34423162-344232... 38 0.012
04_04_0676 - 27187778-27188316,27188441-27188530,27189249-271894... 36 0.048
01_01_0917 + 7238721-7239078,7239590-7239957 33 0.34
11_06_0216 - 21345865-21346152,21347153-21347297,21348311-213483... 31 0.79
10_08_0135 - 15118082-15118300,15118388-15118546,15118783-151188... 31 1.0
12_01_0368 + 2815424-2815658,2816898-2817120,2818329-2818680,281... 31 1.4
12_02_0715 - 22453747-22453935,22454347-22454457,22454514-224545... 30 2.4
11_03_0148 + 10762150-10762264,10762347-10762776,10764653-107647... 30 2.4
09_03_0035 - 11765108-11765376,11765909-11766005,11766505-117665... 30 2.4
03_06_0199 + 32310272-32311432 30 2.4
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503... 29 5.5
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 29 5.5
01_06_0343 + 28566513-28566644,28566791-28568494,28569178-285692... 29 5.5
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 28 7.3
07_01_0068 - 495582-497981 28 7.3
07_01_0040 + 325737-328181 28 7.3
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134... 28 7.3
12_01_0930 + 9235986-9236175,9237362-9237495 28 9.7
08_01_0181 + 1530623-1531626,1531723-1531902,1531998-1532177,153... 28 9.7
03_05_0737 + 27258320-27259007,27259263-27259435,27262684-272627... 28 9.7
01_01_0652 + 4975091-4975585 28 9.7
>02_05_0177 +
26505956-26506202,26506838-26507247,26507448-26507624,
26507775-26507999,26508089-26508265,26508357-26508593,
26508855-26508944,26509102-26509254
Length = 571
Score = 47.6 bits (108), Expect = 1e-05
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 16/194 (8%)
Frame = +1
Query: 250 LKRRVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVGISFIIWMACXXXXXXXXXXXXX 429
L R++G+F V L +G IG+GIFV +G +AR G++ +A
Sbjct: 47 LVRQLGVFELVLLGIGASIGAGIFV-VTGTVARDAGPGVTISFVLAGAACVLNALCYAEL 105
Query: 430 XXTMNTSSGAEYAYFMDAFGGPPAFLFSWVSTLVLKPSQMAIICLSFAKYAVE-----PF 594
G Y Y AF AFL + ++ A I S A Y V+ PF
Sbjct: 106 ASRFPAVVGGAYLYTYAAFNELTAFLV-FTQLMLDYHIGAASIARSLASYFVQFLELIPF 164
Query: 595 VAECEPP-----------DSLVKLVAVISIVMILXVNCYSVNLATNVQNIFTAAKLVAIA 741
+ P V ++A I ++++ + CY V ++ V T K+V +
Sbjct: 165 LKGHIPTWIGHGEEFFGGVVSVNILAPILLIILTTILCYGVKESSAVNTFMTTLKIVIVI 224
Query: 742 IIVCGGAYKLILXN 783
++V G +++ + N
Sbjct: 225 VVVFAGVFEVDVSN 238
>01_06_1086 -
34421837-34422311,34422426-34422612,34423162-34423291,
34423485-34423720,34423804-34423961,34424048-34424128,
34424216-34424281,34424364-34424432,34424722-34424866,
34425645-34426138,34426244-34426811,34429529-34429574
Length = 884
Score = 37.5 bits (83), Expect = 0.012
Identities = 20/44 (45%), Positives = 24/44 (54%)
Frame = +3
Query: 231 SGRPCSPQETGGTLQWGGSNCRHYDWIRNIRIALWAFGAYRLSG 362
+G PCSP+E W G C +YD +N RI L A RLSG
Sbjct: 388 NGDPCSPKE----YTWEGVKCNYYDGKQNPRIILVNLSASRLSG 427
>04_04_0676 -
27187778-27188316,27188441-27188530,27189249-27189480,
27189569-27189899,27190369-27190591,27190772-27191132
Length = 591
Score = 35.5 bits (78), Expect = 0.048
Identities = 42/195 (21%), Positives = 74/195 (37%), Gaps = 11/195 (5%)
Frame = +1
Query: 214 EGSDAAPDDPVHLKRRVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVGISFIIWMACX 393
E S+ +KRR+ + V L VG M+G+G+FV+ +G +AR + F ++
Sbjct: 31 ETSEVRDRSGARMKRRLEWYDLVGLGVGGMLGAGVFVT-TGRVARDTAGPAVFASYVIAG 89
Query: 394 XXXXXXXXXXXXXXTMNTSSGAEYAYFMDAFGGPPAFLFSWVSTLVLKPSQMAIICLSFA 573
++G ++Y FG F F + L+ A + SF
Sbjct: 90 VSALLSSFCYAEFSVRVPAAGGAFSYLRVTFGELVGF-FGGANILMEYVLSNAAVARSFT 148
Query: 574 KYAVEPF-VAECE----PPDSLVK------LVAVISIVMILXVNCYSVNLATNVQNIFTA 720
Y + E + D + K AV I+++ CYS + + + T
Sbjct: 149 DYLASTCGITEPDAWRIQVDGIAKGYNALDFPAVALILVLTLCLCYSTKESAMLNMVITV 208
Query: 721 AKLVAIAIIVCGGAY 765
L+ I+ G +
Sbjct: 209 FHLLFFVFIILAGLW 223
>01_01_0917 + 7238721-7239078,7239590-7239957
Length = 241
Score = 32.7 bits (71), Expect = 0.34
Identities = 35/109 (32%), Positives = 43/109 (39%), Gaps = 2/109 (1%)
Frame = +1
Query: 19 ERPRFFTHSTVLRAMHHNEQPTGNACN-GSTREGGLVWRGCSASCDAEDGTTGAFDDGNS 195
+RP +++ A H P AC S R L+ R C A G G ++ +S
Sbjct: 63 DRPTLQPDASLAAAFH----PCLPACTRSSARSSELIARCCCACGFGGVGQVGEYERCHS 118
Query: 196 NPGDKLEGSDAAPDDPVHLKRRVGLFSGVALIVG-TMIGSGIFVSPSGL 339
PG LE D P P VG SG L G GS IF S L
Sbjct: 119 VPGGGLELGDTNP--PTRTLAMVGTSSGNGLSNGDDNYGSSIFSLKSPL 165
>11_06_0216 -
21345865-21346152,21347153-21347297,21348311-21348360,
21348564-21348938,21349717-21349842
Length = 327
Score = 31.5 bits (68), Expect = 0.79
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 124 VWRGCSASCDAEDGTTGAFDDGNSNPGDKLEGSDAAPDDPVHLKRRV 264
VW G +A+ + G G + ++ GD++ +DAAP P +L RRV
Sbjct: 85 VW-GEAAASEGLGGGAGGWGSSSAYVGDEIRVNDAAPPLPSNLGRRV 130
>10_08_0135 -
15118082-15118300,15118388-15118546,15118783-15118849,
15118969-15119141,15119602-15119698,15119782-15119900,
15120000-15120140,15120214-15120298,15120411-15120612,
15120906-15120970,15121365-15121654
Length = 538
Score = 31.1 bits (67), Expect = 1.0
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = +1
Query: 637 AVISIVMILXVNCYSVNLATNVQNIFTAAKLVAIAIIVCGGAY 765
A I ++++ + C + ++ V+ I T A ++ + ++C G Y
Sbjct: 244 AAILVLIVTALLCLGIKESSFVEGIITIANVIVMLFVICAGGY 286
>12_01_0368 +
2815424-2815658,2816898-2817120,2818329-2818680,
2819354-2819620
Length = 358
Score = 30.7 bits (66), Expect = 1.4
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 13/176 (7%)
Frame = +1
Query: 280 VALIVGTMIGSGIFVSPSGL--LARTGSVGISFIIWMACXXXXXXXXXXXXXXXTMNTSS 453
V L +G M+G+G+FV+ L +V +S+ I C + +
Sbjct: 11 VGLGLGGMVGAGVFVTTGRATRLYAGPAVVVSYAIAGLCALLSAFCYTEFAVDMPV---A 67
Query: 454 GAEYAYFMDAFGGPPAFLFSWVSTLVLKPSQMAIICLSFAKY---AV---EPFVAECEPP 615
G ++Y FG AFL + + ++ A + SF Y AV P P
Sbjct: 68 GGAFSYLRVTFGELAAFL-TGANLIMEYVFSNAAVARSFTAYLGTAVGVDAPSKWRIAVP 126
Query: 616 D-----SLVKLVAVISIVMILXVNCYSVNLATNVQNIFTAAKLVAIAIIVCGGAYK 768
+ V LVAV I++I CYS +++V + TA ++ I ++ G ++
Sbjct: 127 GLPKGFNEVDLVAVGVILLITVCICYSTKESSSVNMVLTAVHVLFIMFVIVMGFWR 182
>12_02_0715 - 22453747-22453935,22454347-22454457,22454514-22454572,
22454893-22455067,22455255-22455307,22455670-22455739,
22457044-22457218,22457639-22457703,22458196-22460826
Length = 1175
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 194 QTQETSWRGRTQLRTTLFTSRDGWDSSVGWL*LSAL*LDQEYSYRPL 334
+T E WR R + F DG DSS+ L + D +YSYR +
Sbjct: 1038 ETYERDWRPGLNFRFSRFDRSDGNDSSIREL-TGQMLQDMKYSYRSI 1083
>11_03_0148 +
10762150-10762264,10762347-10762776,10764653-10764735,
10764980-10765068,10765178-10765251,10765333-10765383,
10765687-10765763,10766237-10767012
Length = 564
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 128 GAGAQPAAMPKTARRERSTMATQTQETS-WRGRTQLRTTLFTSRDGWDSS 274
G GA AA A+R ++ M T Q TS +RG T+ R T WD+S
Sbjct: 148 GGGAAEAAAAAAAQRMKAAMDTFGQRTSIYRGVTKHRWTGRYEAHLWDNS 197
>09_03_0035 -
11765108-11765376,11765909-11766005,11766505-11766579,
11767367-11767650,11768466-11768562
Length = 273
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/81 (27%), Positives = 31/81 (38%)
Frame = +3
Query: 51 ASSNASQ*TADRECMQREHTRRRIGLARVLSQLRCRRRHDGSVRRWQLKPRRQAGGVGRS 230
A+S S D E +R+ T +A V + R RRR + + KP R G +S
Sbjct: 6 AASTWSTAIGDGEVRRRQATALARWIAGVSERERDRRRRAAAAAAREPKPERMVFGRSKS 65
Query: 231 SGRPCSPQETGGTLQWGGSNC 293
S SP + C
Sbjct: 66 SSSTASPPPAAAASSAAAAAC 86
>03_06_0199 + 32310272-32311432
Length = 386
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 84 RECMQREHTRRRIGLARVLSQLRCRRRHDGSVRRWQLKPRRQA--GGV 221
R+ + R +RR L RV +LR R H RRW L+ RR+A GGV
Sbjct: 137 RQGLLRRPRQRR--LLRVRGELRVRS-HQAGRRRWPLRRRRRARVGGV 181
>12_01_0611 -
5034481-5034709,5034863-5035020,5035231-5035475,
5036686-5036983,5037644-5038482,5039763-5039823
Length = 609
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Frame = +1
Query: 40 HSTVLRAMHHNEQPTGNACNGST--REGGLVWRGCSASCDAEDGTTGAFDDGNSNPGDKL 213
H V + + Q +C T +EGGL GC D +G + DD + + D L
Sbjct: 102 HGVVTAPLANGWQWGARSCPPGTESKEGGLPLSGCDPETDNAEGYDTSDDDNDDDMSDDL 161
Query: 214 E---GSDAAPDDPVHLKRRVGLFSG 279
SDA+ + ++ LF G
Sbjct: 162 SDDYDSDAS-EKSFETRKNHKLFKG 185
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 82 TGNACNGSTREGGLVWRGCSASCDAEDGTTGAFDDGNSNPG 204
TG+AC+ T EG GC C E+ TG G G
Sbjct: 57 TGDACSPGTAEG-----GCGGGCGGENDDTGNGGGGGGGGG 92
>01_06_0343 +
28566513-28566644,28566791-28568494,28569178-28569240,
28569241-28569310,28570438-28570715,28571886-28571963,
28573017-28573715,28573811-28573913,28574096-28574196,
28574272-28574446,28574843-28575013,28575534-28575634,
28575706-28575771
Length = 1246
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +1
Query: 154 AEDGTTGAFDDGNSNPGDKLEGSDAAPDDPVHLKRRVGLFSGVALIVGTMIGSGIFVSPS 333
A DG G G +GSDA D+ L R+G +G A T +G+G V+P+
Sbjct: 691 ARDGDGGGAPGDGERGGVDGDGSDATGDEKAAL--RMGTGTGTA---ATRLGTGTAVAPT 745
Query: 334 GL 339
L
Sbjct: 746 WL 747
>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -1
Query: 650 IEMTATNLTKLSGGSHSATKGSTAYLAKLRQIMAICDGFKTNVDTHEKR 504
+E + N + L SA KGS A + KL+ + C+ + N+D +++
Sbjct: 1097 VESLSKNNSSLEYELTSARKGSDATMKKLKDVEGKCNHLQQNLDKLQEK 1145
>07_01_0068 - 495582-497981
Length = 799
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 211 ACLLGLSCHRRTLPSCRLRHRSWLSTRAKPIRLR 110
A +L L C R + +H +WLS A+ +RL+
Sbjct: 356 AAILMLLCSNRMIVFLEAKHMAWLSRVARAVRLQ 389
>07_01_0040 + 325737-328181
Length = 814
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 211 ACLLGLSCHRRTLPSCRLRHRSWLSTRAKPIRLR 110
A +L L C R + +H +WLS A+ +RL+
Sbjct: 386 AAILMLLCSNRMIVFLEAKHMAWLSRVARAVRLQ 419
>04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,
1342225-1342799,1343596-1343703,1345823-1346155,
1346783-1349306
Length = 1630
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +1
Query: 199 PGDKLEGSDAAPDDPVHLKRRVGLFSGVALIVGTMIGSGIFVSPSG---LLARTGSVGI 366
P + G D AP P GL +G + G + G G V P+G A+ GS G+
Sbjct: 1100 PPFPVAGGDVAPGGPAVTIPAAGLQAGGHVAGGLVDGKGAVVGPTGGTKAAAKLGSGGV 1158
>12_01_0930 + 9235986-9236175,9237362-9237495
Length = 107
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/55 (27%), Positives = 21/55 (38%)
Frame = +1
Query: 136 CSASCDAEDGTTGAFDDGNSNPGDKLEGSDAAPDDPVHLKRRVGLFSGVALIVGT 300
CS + G G DD G K+ + PD P+ + F V L+ T
Sbjct: 27 CSGGLTTKQGERGQHDDRGGRHGTKMADEELGPDLPIAATKDDCYFPHVRLMRDT 81
>08_01_0181 +
1530623-1531626,1531723-1531902,1531998-1532177,
1532363-1532442,1532528-1532701,1533001-1533118,
1533223-1533301
Length = 604
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 476 MK*AYSAPDDVFIVPNS-AYASAPSNESRPHAIQMMKLMPTEPVRAKSPEGDT 321
M + ++PD + IV NS A + N H ++L+P P A +P G++
Sbjct: 547 MNPSLASPDPLEIVSNSQAPPTQAGNIYDDHESNQIELLPESPFAASAPAGNS 599
>03_05_0737 +
27258320-27259007,27259263-27259435,27262684-27262758,
27262832-27263296
Length = 466
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 229 LRPTPPACLLGLSCHRRTLPSCRLRHRSWLSTRAKPI 119
L + PA +G+S HR L SC R WL +PI
Sbjct: 187 LAASRPAAAVGVS-HRDALQSCAQHARLWLRRADEPI 222
>01_01_0652 + 4975091-4975585
Length = 164
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = +1
Query: 151 DAEDGTTGAFDDGNSNPGDKLEGSDAAPDD------PVHLKRRVGLFSG 279
D +DG DD + + GD + D APDD H RRV L G
Sbjct: 86 DDDDGGPDDLDDDDPDNGDLGDDDDGAPDDDDGGLGTGHWGRRVALAEG 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,859,577
Number of Sequences: 37544
Number of extensions: 617564
Number of successful extensions: 2163
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2162
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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