Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_H17
(834 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 315 4e-87
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 269 4e-73
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 144 2e-35
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 132 8e-32
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 124 1e-29
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 118 8e-28
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 118 1e-27
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 111 9e-26
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 107 1e-24
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 106 4e-24
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 106 4e-24
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 105 8e-24
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 104 2e-23
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 101 1e-22
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 100 2e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 98 1e-21
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 95 1e-20
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 91 2e-19
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 78 2e-15
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 77 4e-15
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 73 7e-14
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 63 4e-11
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 58 2e-09
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 42 1e-04
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 30 0.47
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 3.3
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 27 3.3
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 27 4.3
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 5.7
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 26 5.7
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 26 5.7
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 7.6
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 315 bits (774), Expect = 4e-87
Identities = 147/206 (71%), Positives = 175/206 (84%)
Frame = +2
Query: 185 EDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIA 364
E + NVE TSEDV + +F+ M L+++LLRGIY YG+E PSA+Q R+I+ I KGRDVIA
Sbjct: 4 EIMENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIA 63
Query: 365 QAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHAC 544
QAQSGTGKTATFSI ILQ++D ++R+TQ LILSPTRELA QIQ V+LALGD MNVQCHAC
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHAC 123
Query: 545 IGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEMLNKGFKEQ 724
IGGT++G DI+KLDYGQHVVSGTPGRV DMIRRR LRTR++KML+LDEADE+LN+GFKEQ
Sbjct: 124 IGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQ 183
Query: 725 IYDVYRYLPPATQGCAYISNTTP*DI 802
IYD+YRYLPP TQ +S T P D+
Sbjct: 184 IYDIYRYLPPGTQ-VVVVSATLPQDV 208
Score = 33.5 bits (73), Expect = 0.038
Identities = 13/20 (65%), Positives = 19/20 (95%)
Frame = +3
Query: 762 RVVLISATLPHEILEMTSKF 821
+VV++SATLP ++LEMT+KF
Sbjct: 196 QVVVVSATLPQDVLEMTNKF 215
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 269 bits (659), Expect = 4e-73
Identities = 130/206 (63%), Positives = 164/206 (79%)
Frame = +2
Query: 185 EDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIA 364
+ L + +T+ D EVI TFD M L+ ELLRGIY YGFE+PSAIQQR+I+PI+ RDV+A
Sbjct: 3 DQLEDSVIETNYD-EVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLA 61
Query: 365 QAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHAC 544
QAQSGTGKTATFSIS+LQ +DT+L++ Q LIL+PTRELA QIQKV++ALGD MNV+CHAC
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHAC 121
Query: 545 IGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEMLNKGFKEQ 724
IGGT + +D+ L G HVV GTPGRV DMI+RR L T +++M VLDEADEML++GFK+Q
Sbjct: 122 IGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQ 181
Query: 725 IYDVYRYLPPATQGCAYISNTTP*DI 802
IYD+++ LPP Q +S T P D+
Sbjct: 182 IYDIFQLLPPTAQ-VVLLSATMPQDV 206
Score = 31.9 bits (69), Expect = 0.12
Identities = 12/20 (60%), Positives = 19/20 (95%)
Frame = +3
Query: 762 RVVLISATLPHEILEMTSKF 821
+VVL+SAT+P ++LE+T+KF
Sbjct: 194 QVVLLSATMPQDVLEVTTKF 213
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 144 bits (348), Expect = 2e-35
Identities = 81/184 (44%), Positives = 108/184 (58%)
Frame = +2
Query: 242 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 421
F+ L+ ELL GI+ GFE+PS IQ+ SI + GRD++A+A++GTGKTA F I L+
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 422 LDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHV 601
+DT + Q LIL PTRELA Q +V LG MNV+ GGT L +DI +L+ H+
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHI 165
Query: 602 VSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQGCAYIS 781
V GTPGRV D+ + V V+DEAD++L+ F I + Y P Q Y S
Sbjct: 166 VVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLY-S 224
Query: 782 NTTP 793
T P
Sbjct: 225 ATFP 228
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 132 bits (318), Expect = 8e-32
Identities = 74/207 (35%), Positives = 126/207 (60%), Gaps = 3/207 (1%)
Frame = +2
Query: 152 SEVSSNRKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSI 331
S + N+ + L++++ D + + + +F+ + L+ ELL+GIY+ F+KPS IQ++++
Sbjct: 86 SNLIPNKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
Query: 332 LPIVKG--RDVIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVIL 505
++ R++I Q+QSGTGKTA F++++L +D ++ + Q + L+P+RELA QI V+
Sbjct: 146 PLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVT 205
Query: 506 ALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLD 685
+G + V+ G + K+D +V GTPG V D+++RR L R IK+ VLD
Sbjct: 206 EMGKYTEVK--TAFGIKDSVPKGAKID--AQIVIGTPGTVMDLMKRRQLDARDIKVFVLD 261
Query: 686 EADEMLN-KGFKEQIYDVYRYLPPATQ 763
EAD ML+ +G +Q + LP TQ
Sbjct: 262 EADNMLDQQGLGDQSMRIKHLLPRNTQ 288
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 124 bits (300), Expect = 1e-29
Identities = 71/186 (38%), Positives = 105/186 (56%), Gaps = 2/186 (1%)
Frame = +2
Query: 242 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 421
F SMGL LLR I+ GF+ P+ IQ+++I +++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 422 LDTTLRE--TQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ 595
L +TL T+ LILSP RELA Q KV+ +++ A +GG +L E L
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKP 190
Query: 596 HVVSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQGCAY 775
+V TPGR + L SI+ +V DEAD + GF Q+ ++ LP + Q +
Sbjct: 191 DIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLF 250
Query: 776 ISNTTP 793
S T P
Sbjct: 251 -SATLP 255
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 118 bits (285), Expect = 8e-28
Identities = 67/174 (38%), Positives = 98/174 (56%), Gaps = 5/174 (2%)
Frame = +2
Query: 257 LRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTL 436
L+ ELLR I GFE PS +QQ I + G DV+ QA+SG GKTA F +S LQ ++
Sbjct: 58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVD 117
Query: 437 RETQVLILSPTRELATQIQKVILALGDFM-NVQCHACIGGTNLGEDI---RKLDYGQHVV 604
E VL+L TRELA QI+ ++ +V+ GG N+ +D+ + H+V
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 605 SGTPGRVFDMIRRRVLRTRSIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQ 763
TPGR+ ++R ++L+ S+K VLDE D++L + I +V+R PP Q
Sbjct: 178 VATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQ 231
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 118 bits (284), Expect = 1e-27
Identities = 65/188 (34%), Positives = 105/188 (55%), Gaps = 4/188 (2%)
Frame = +2
Query: 239 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 418
+F SM L +L+G+ GFE P+ IQ ++I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 419 TL---DTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDY 589
L + T+VLIL PTRELA Q V + F ++ CIGG +L ++L
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 590 GQHVVSGTPGRVFDMIRR-RVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQG 766
+V TPGR D +R + +I+++V+DEAD ML GF +++ ++ + P + Q
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQT 439
Query: 767 CAYISNTT 790
+ + T
Sbjct: 440 MLFSATMT 447
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 111 bits (268), Expect = 9e-26
Identities = 70/213 (32%), Positives = 114/213 (53%), Gaps = 8/213 (3%)
Frame = +2
Query: 137 RKMTSSEVSS--NRKI-----LSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYG 295
+K+T + +S N+KI SE S S++ E TF +G+ DEL G
Sbjct: 6 KKLTEDKKNSSLNKKIETSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLG 65
Query: 296 FEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRE 475
F+ P+ IQQ +I ++ RDVI AQ+G+GKTA F++ ++Q L ++L+PTRE
Sbjct: 66 FKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRE 125
Query: 476 LATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRR-RVL 652
LA QI + A+G + V+ +GG ++ L HV+ TPGR+ D + +
Sbjct: 126 LAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGF 185
Query: 653 RTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLP 751
+++K L++DEAD +L+ F I + + +P
Sbjct: 186 SLKNLKYLIMDEADRLLDMDFGPIIDKILKIIP 218
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 107 bits (258), Expect = 1e-24
Identities = 69/202 (34%), Positives = 111/202 (54%), Gaps = 5/202 (2%)
Frame = +2
Query: 197 NVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQS 376
N+ ++ D+E F + L + + + I GFE + IQ+RSI P++ GRDV+ A++
Sbjct: 79 NLNASSTSDIE---KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKT 135
Query: 377 GTGKTATF---SISILQTLDTTLRE-TQVLILSPTRELATQIQKVILALGDFMNVQCHAC 544
G+GKT F +I +L L R T V+I+SPTRELA QI V L + +
Sbjct: 136 GSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIV 195
Query: 545 IGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRSIKMLVLDEADEMLNKGFKE 721
IGG N + KL G +++ TPGR+ D ++ + R+++ LV+DEAD +L GF++
Sbjct: 196 IGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFED 255
Query: 722 QIYDVYRYLPPATQGCAYISNT 787
++ + + LP + S T
Sbjct: 256 EMRQIMKILPSENRQTLLFSAT 277
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 106 bits (254), Expect = 4e-24
Identities = 61/201 (30%), Positives = 110/201 (54%), Gaps = 8/201 (3%)
Frame = +2
Query: 173 KILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGR 352
+IL ED N+ + + ++ GL E+L+ + +++PS+IQ+ +I +++ +
Sbjct: 229 RILKEDY-NISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287
Query: 353 DVIAQAQSGTGKTATFSISILQTLDTT--LRETQV------LILSPTRELATQIQKVILA 508
D+I A++G+GKTA F I ++ + L E+ + ++L+PTRELA QIQ
Sbjct: 288 DLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNK 347
Query: 509 LGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDE 688
+ + +C + +GG E ++ G H+V TPGR+ D + RR+ +V+DE
Sbjct: 348 FAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDE 407
Query: 689 ADEMLNKGFKEQIYDVYRYLP 751
AD ML+ GF++ + + LP
Sbjct: 408 ADRMLDMGFEDDVNKILSSLP 428
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 106 bits (254), Expect = 4e-24
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 5/195 (2%)
Frame = +2
Query: 233 IPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISI 412
+ TF+ G + +L+ + GFE P+ IQQ++ + GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 413 L-----QTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIR 577
+ Q L + VL+L+PTRELA QIQ+ G ++ GG G IR
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
Query: 578 KLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 757
L G + TPGR+ DM+ R + LVLDEAD ML+ GF+ QI + + P
Sbjct: 241 DLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 300
Query: 758 TQGCAYISNTTP*DI 802
Q + S T P ++
Sbjct: 301 RQTVMF-SATWPKEV 314
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 105 bits (252), Expect = 8e-24
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 4/175 (2%)
Frame = +2
Query: 239 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 418
+F +G+ L+ + +P+ IQ+ I I++GR+ I A++G+GKTA F++ I++
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 419 TLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQH 598
LIL+PTRELA QI + ALG +N++ +GG ++ L H
Sbjct: 68 KWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPH 127
Query: 599 VVSGTPGRVFDMIR----RRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLP 751
VV TPGR+ D+IR + R IK LV+DEAD +L+ F + + D + LP
Sbjct: 128 VVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLP 182
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 104 bits (249), Expect = 2e-23
Identities = 67/208 (32%), Positives = 111/208 (53%), Gaps = 3/208 (1%)
Frame = +2
Query: 149 SSEVSSNRKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRS 328
+ E + +R I ++S + +SE++ I FD + + +L G+ Y ++P+ IQ +
Sbjct: 138 NDEEAYDRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKNY--KEPTPIQAAT 195
Query: 329 ILPIVKGRDVIAQAQSGTGKTATFSISILQTLD---TTLRETQVLILSPTRELATQIQKV 499
++ GRDV+ A++G+GKT F I LQ L+ +VL++SPTRELA Q +
Sbjct: 196 WPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYEN 255
Query: 500 ILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLV 679
+ +L N++ GG E R V+ GTPGR+ D+I + + LV
Sbjct: 256 LNSLIQGTNLKAVVVYGGAPKSEQARAAKNAS-VIIGTPGRLLDLINDGSIDCSQVGYLV 314
Query: 680 LDEADEMLNKGFKEQIYDVYRYLPPATQ 763
LDEAD ML+ GF++ I ++ + P T+
Sbjct: 315 LDEADRMLDTGFEQDIRNIISHTPDPTR 342
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 101 bits (243), Expect = 1e-22
Identities = 70/187 (37%), Positives = 99/187 (52%), Gaps = 18/187 (9%)
Frame = +2
Query: 221 DVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATF 400
D+E + F S L LL+ I G+ +P+ +Q+ SI + GRD++A AQ+G+GKTA F
Sbjct: 164 DIEPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGF 223
Query: 401 SISIL--------------QTLDTTLRETQV----LILSPTRELATQIQKVILALGDFMN 526
IL Q R + LIL+PTREL QI +
Sbjct: 224 LFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSW 283
Query: 527 VQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEMLN 706
V+ A GG ++ IR++D G ++S TPGR+ D+I R + +IK LVLDEAD ML+
Sbjct: 284 VRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLD 343
Query: 707 KGFKEQI 727
GF+ QI
Sbjct: 344 MGFEPQI 350
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 100 bits (240), Expect = 2e-22
Identities = 66/184 (35%), Positives = 97/184 (52%), Gaps = 9/184 (4%)
Frame = +2
Query: 239 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 418
TF L L R I+ FEKP+++Q +I ++G+D++AQA++G+GKTA + I IL+
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 419 TL------DTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRK 580
L D R L+L PTRELA Q+ V+ L F + TN + +++
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQR 134
Query: 581 ---LDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLP 751
LD +V TP R + VL +K LV+DEAD ML+ G+ E + + R LP
Sbjct: 135 PLLLDL-PDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLP 193
Query: 752 PATQ 763
TQ
Sbjct: 194 RGTQ 197
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 98.3 bits (234), Expect = 1e-21
Identities = 60/185 (32%), Positives = 97/185 (52%), Gaps = 8/185 (4%)
Frame = +2
Query: 233 IPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISI 412
+ ++ GL + + I + G+EKP++IQ ++I I GRDVI A++G+GKT F + +
Sbjct: 417 VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPM 476
Query: 413 LQTL-DTTLRETQ----VLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIR 577
+ + D +T +I++PTRELA QI + +N++ GG + + I
Sbjct: 477 FRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIA 536
Query: 578 KLDYGQHVVSGTPGRVFDMIRR---RVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYL 748
L G +V TPGR+ D++ RV LVLDEAD M + GF+ Q+ + +
Sbjct: 537 DLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNI 596
Query: 749 PPATQ 763
P Q
Sbjct: 597 RPDRQ 601
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 95.1 bits (226), Expect = 1e-20
Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 8/225 (3%)
Frame = +2
Query: 140 KMTS--SEVSSNRKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSA 313
+MTS S+V+S L + S V+V + L E+L + GF KP
Sbjct: 89 EMTSLGSKVTSKNYNEFSTLEEEDEHNSHGVDV-SAWAHFSLSPEMLGSLSKAGFSKPMP 147
Query: 314 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL--DTTLRETQVLILSPTRELATQ 487
IQ I G D+I +A +G+GKT F I IL+ + + Q L+++PTRELA Q
Sbjct: 148 IQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQ 207
Query: 488 IQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVL--RTR 661
I + + N++ + GG + + R L+ HVV TPGR++ +I L +
Sbjct: 208 ICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFK 267
Query: 662 SIKMLVLDEADEMLNKGFKEQIYDVYRYL--PPATQGCAYISNTT 790
IK LVLDEAD +L K E++ + L P TQ +I + T
Sbjct: 268 KIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSAT 312
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 91.1 bits (216), Expect = 2e-19
Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 5/212 (2%)
Frame = +2
Query: 170 RKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKG 349
RK E++ + E + F + L + F + IQ++ I +KG
Sbjct: 17 RKEEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKG 76
Query: 350 RDVIAQAQSGTGKTATFSISILQTLD----TTLRETQVLILSPTRELATQIQKVILALGD 517
RD++ A++G+GKT F + +++ L T+L L++SPTRELA Q + ++ +G
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGR 136
Query: 518 FMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRV-LRTRSIKMLVLDEAD 694
+ IGG N E+ +L +++ TPGR+ I + V T ++ML+LDEAD
Sbjct: 137 LHSFSAGLIIGGNNYKEEKERLS-RMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEAD 195
Query: 695 EMLNKGFKEQIYDVYRYLPPATQGCAYISNTT 790
+L+ GF+ + + LP Q + + T
Sbjct: 196 RILDMGFRTTLDAIVSSLPVHRQTMLFSATQT 227
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 77.8 bits (183), Expect = 2e-15
Identities = 55/184 (29%), Positives = 95/184 (51%), Gaps = 13/184 (7%)
Frame = +2
Query: 239 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 418
+F S+ + L + GF+K + +Q +I +K +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 419 TL---DTTLRETQVLILSPTRELATQI---QKVILA-----LGDFMNVQCHACIGGT-NL 562
+ DT LI++PTRELATQI K +LA L + IGG L
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTL 121
Query: 563 GEDIRKL-DYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVY 739
D+ + VV GTPGR+ +M+ + ++ +++L+LDEAD +++ GF+ + +
Sbjct: 122 TNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSII 179
Query: 740 RYLP 751
LP
Sbjct: 180 SQLP 183
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 76.6 bits (180), Expect = 4e-15
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 8/180 (4%)
Frame = +2
Query: 293 GFEKPSAIQQRSILPIVKGRD-VIAQAQSGTGKTATFSISILQTL---DTTLRETQV--L 454
GFEK + +QQR + + + + QA++GTGKT F + + + L +++ +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 455 ILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ-HVVSGTPGRVFD 631
ILSPTRELA QI + L ++ IGG + + + G +++ TPGR+ D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
Query: 632 MIRR-RVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQGCAYISNTTP*DIGN 808
++ R+L + S +LDEAD +++ GF E I +++ + S T P + N
Sbjct: 177 HLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSN 236
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 72.5 bits (170), Expect = 7e-14
Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 14/226 (6%)
Frame = +2
Query: 113 KNLEAN*IRKMTSSEVSSNRKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTY 292
+NLE N I + +++ +SN I + + + V+ DT L D L +
Sbjct: 114 QNLEDNQISNIGTTKEASNAPIKTTNFAGVQLDTQ-------------LADHLNNKM--- 157
Query: 293 GFEKPSAIQQRSILPIVK--GRDVIAQAQSGTGKTATFSISILQ-------TLDTTLRET 445
P+AIQ + ++ +D +AQ+G+GKT + + I+Q L T
Sbjct: 158 NISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGI 217
Query: 446 QVLILSPTRELATQIQKVILALGD----FMNVQCHACIGGTNLGEDIRKLDYGQHVVSGT 613
+I++PTREL QI V L + V C+ IGG + ++ G +++ GT
Sbjct: 218 YAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGT 276
Query: 614 PGRVFDMIRR-RVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYL 748
PGR+ D + L ++ +VLDE D +++ GF+E + + YL
Sbjct: 277 PGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYL 322
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 63.3 bits (147), Expect = 4e-11
Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 8/164 (4%)
Frame = +2
Query: 260 RDELLRGIYTYGFEKPSAIQQRSILPIVK-GRDVIAQAQSGTGKTATFSISILQTLD-TT 433
+ + RG P +Q P+ G DV A +G+GKT ++ I I+Q L T
Sbjct: 143 KQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRT 202
Query: 434 LRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQH----- 598
+ + +++ PTREL Q+ K +Q A G +L + +L+ ++
Sbjct: 203 VPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRID 262
Query: 599 VVSGTPGRVFDMIRR-RVLRTRSIKMLVLDEADEMLNKGFKEQI 727
V+ TPGR+ D IR + ++ +V+DEAD +L++ F++ +
Sbjct: 263 VLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWV 306
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 57.6 bits (133), Expect = 2e-09
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Frame = +2
Query: 308 SAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTL-RETQVLILSPTRELAT 484
+ IQ+ +I I RD++A A +G+GKT + ILQ L + + +I++PTREL
Sbjct: 70 TTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCE 129
Query: 485 QI--QKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRT 658
QI Q L+ G + + + E KL + GTP R+ I+ L
Sbjct: 130 QIYRQAEKLSFGTSLKI-IELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTG-LSF 187
Query: 659 RSIKMLVLDEADEMLNKGFKEQ 724
++ V+DEAD + GF EQ
Sbjct: 188 EKVEFFVMDEADRLFEPGFIEQ 209
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 41.5 bits (93), Expect = 1e-04
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 9/157 (5%)
Frame = +2
Query: 248 SMGLRDELLRGIYTY-GFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL 424
S L EL+ +YT EK Q +I + G VI + +GK+ + I ILQ+L
Sbjct: 292 SRPLSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL 351
Query: 425 DTTLRETQVLILSPTRELATQIQKVILALGDFM----NVQCHACIGGTNLGEDIRKLDYG 592
+ T + PT+ LA +K ++ + +M N++ G T L E +
Sbjct: 352 LEDNQSTAFFVF-PTKSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPL-ESRESIIRS 409
Query: 593 QHVVSGTPGRVFDMIRRRVLR----TRSIKMLVLDEA 691
+++ P + I R +++K+ VLDEA
Sbjct: 410 ANIIFTNPDMLHQTILPNANRWYYFFKNLKLFVLDEA 446
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 29.9 bits (64), Expect = 0.47
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +2
Query: 587 YGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 763
YGQ+ + P + + +L + +V D+ D+ ++ E + ++RYLPP +
Sbjct: 467 YGQYDIRKDPHQNI-ALPDSMLSRFDLLFIVTDDIDDKKDRALSEHVLRMHRYLPPGVE 524
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 222 MSKLYPLLTPWDFEMSYCEEYTHMVSKNLQQFSREASCL*SKAEM**LKHNLVQERLRHS 401
MS L L T + FE++ +++ +++K + F + ++ EM L HN+ Q R S
Sbjct: 1124 MSFLVTLQTTYSFELTLNYDFSELLTKVVFPFLSPVDTITAEQEMRDLLHNIRQPLPRSS 1183
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 638 RRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLP 751
RR L+ I V +A + ++ G + D YRY P
Sbjct: 458 RRSALKFTDIDYFVFSDASKYVSIGMSPYMRDTYRYTP 495
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 282 IPRNNSSRSPMESKVGITSTSSLVSNSTF 196
I +NN+ +SP++ +V ITS SS +TF
Sbjct: 41 IIQNNTRKSPLK-RVSITSESSFYKENTF 68
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 320 QRSILPIVKGRD--VIAQAQSGTGKTATFSISILQTLDTTLRE 442
Q + PI G D ++ A +G GKT + IL L LRE
Sbjct: 524 QSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLRE 566
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 355 ISAFDYRQDASLLNC*RF--FETICVYSSQ*LISKSH 251
I AF Y D LNC + ++T+C+ ++ +I SH
Sbjct: 784 IKAFTYNVDTKQLNCIKSWKYKTVCLVFAEAVIFGSH 820
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 5.7
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 13 CYLWLWTQFPKFPFGNLEIQILRDIHLSFNLLF*KLRSELDSKNDIV*SIVQ*KNIVGRF 192
CYLWL+ P PF + +L D L ++ ++D I ++ K+I G F
Sbjct: 501 CYLWLFLYCPFTPFLTVFSHLLEDDDLDADICV----KDVDRLYSIHAFFLKMKDISGEF 556
Query: 193 VE 198
E
Sbjct: 557 AE 558
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 294 PYVYIPRNNSSRSPMESKVGITSTSS 217
PY IP NN SPM VG + +++
Sbjct: 303 PYKSIPLNNRPYSPMSEIVGFSGSTT 328
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,438,528
Number of Sequences: 5004
Number of extensions: 73763
Number of successful extensions: 307
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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