Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_H17
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      119   3e-29
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              29   0.070
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  119 bits (287), Expect = 3e-29
 Identities = 69/188 (36%), Positives = 112/188 (59%), Gaps = 11/188 (5%)
 Frame = +2

Query: 197 NVEFDTSED--VEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQA 370
           N++ + S D   + I +F++ GLR+ +L  I   G++KP+ +Q+ ++  I+ GRD++A A
Sbjct: 181 NIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACA 240

Query: 371 QSGTGKTATFSISILQTL---------DTTLRETQVLILSPTRELATQIQKVILALGDFM 523
           Q+G+GKTA F++ I+ TL          +T  E QV+I+SPTREL  QI + I+      
Sbjct: 241 QTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNS 300

Query: 524 NVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEML 703
            ++     GGT++     KL  G H++  TPGR+ D + +  ++  S++ LVLDEAD ML
Sbjct: 301 ILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRML 360

Query: 704 NKGFKEQI 727
           + GF   I
Sbjct: 361 DMGFLPSI 368


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 28.7 bits (61), Expect = 0.070
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 400 ECRSLSCTRLCLSYYISAFDYRQDASLLNC*RFFETICVYSS--Q*LISKSHGVKSGYN 230
           E R L C   CL       D +++ SL     FF+ I  Y +  Q  IS+  G+  G N
Sbjct: 65  ETRQLKCYMYCLWEQFGLVDDKRELSLNGMLTFFQRIPAYRAEVQKAISECKGIAKGDN 123


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 537 MLVLEVPILEKI*GNWITDSMLC 605
           +LV+ + +L +I GNW   +++C
Sbjct: 92  LLVMPMALLYEISGNWSFGTIMC 114


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 368 AQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELAT 484
           A+ G G           TLDT LRE Q  +   ++  +T
Sbjct: 55  AEEGEGMAGVTGEEPFDTLDTFLRELQADLAEASQPTST 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,738
Number of Sequences: 438
Number of extensions: 5143
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)