Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_H12
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.66 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.66 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.66 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.66 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 449  EASSETLTQRLLGRAASSGRADDNEETIKLRL 544
            EA  +   + LLG   S G +DD+E +I++ L
Sbjct: 1082 EAKRKAKQKSLLGFLQSGGTSDDDEGSIEISL 1113


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 449  EASSETLTQRLLGRAASSGRADDNEETIKLRL 544
            EA  +   + LLG   S G +DD+E +I++ L
Sbjct: 1082 EAKRKAKQKSLLGFLQSGGTSDDDEGSIEISL 1113


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 449  EASSETLTQRLLGRAASSGRADDNEETIKLRL 544
            EA  +   + LLG   S G +DD+E +I++ L
Sbjct: 1082 EAKRKAKQKSLLGFLQSGGTSDDDEGSIEISL 1113


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 449  EASSETLTQRLLGRAASSGRADDNEETIKLRL 544
            EA  +   + LLG   S G +DD+E +I++ L
Sbjct: 1082 EAKRKAKQKSLLGFLQSGGTSDDDEGSIEISL 1113


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = -3

Query: 195 NPYLATILSHCVPFPDPGPPRTHTIGFFDVSMGAI 91
           NP   ++++   P+P  G  R   +G+    +G +
Sbjct: 376 NPEYISVVNPESPYPQIGSERATPVGYHQNEVGGV 410


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,771
Number of Sequences: 336
Number of extensions: 3806
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)