Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_H10
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces...    75   1e-14
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    26   4.4  

>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 160

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 32/99 (32%), Positives = 54/99 (54%)
 Frame = +2

Query: 98  HKVFYAKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQNKIFVSSGTIT 277
           ++  Y K  V Q+D+P+  G  GIL  HVP +  L+PGV+++ +    ++K F+S G   
Sbjct: 39  YQTIYEKVPVTQVDIPAEDGEMGILKDHVPMIQCLKPGVISVTDESSNKSKYFISGGFAV 98

Query: 278 VNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQSEFNSA 394
               + + +   EA+ LE    S A + L K ++E NS+
Sbjct: 99  QQPSNELSITVPEAYKLEDFSSSVANQLLEKHKAEMNSS 137


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 113 AKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDG 238
           ++ V+ +++VP  +    I P  VP L  L       LE DG
Sbjct: 426 SESVLPEVNVPPITTFSIIRPSRVPALRFLAAPATRTLERDG 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,974
Number of Sequences: 5004
Number of extensions: 28648
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)