Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_H10
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0467 - 18479199-18479543,18481145-18481417 72 3e-13
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073... 29 2.0
11_05_0074 + 18850567-18851095,18851249-18851274,18851353-188516... 29 2.6
04_01_0542 - 7005972-7007443,7008568-7008766,7008780-7008855,700... 29 2.6
08_02_0274 - 15192670-15192983,15193110-15193200,15193295-151936... 28 4.5
09_01_0069 - 1010888-1011226,1011412-1011600 28 6.0
02_01_0608 + 4557017-4557265 28 6.0
09_03_0061 - 11967727-11967765,11967872-11967910,11967996-119682... 27 7.9
>07_03_0467 - 18479199-18479543,18481145-18481417
Length = 205
Score = 72.1 bits (169), Expect = 3e-13
Identities = 39/100 (39%), Positives = 62/100 (62%)
Frame = +2
Query: 98 HKVFYAKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQNKIFVSSGTIT 277
+K A + V + VP+ +G G+LP HV T+A L+PGV+++ E + K FVSSG
Sbjct: 83 YKSEIANKEVDMVIVPATTGQMGVLPGHVSTIAELKPGVLSVHEGN-DITKYFVSSGFAF 141
Query: 278 VNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQSEFNSAS 397
V+ +S ++A EA PL+ ID +A Q+ L++ ++ SAS
Sbjct: 142 VHANSIADIVAVEAVPLDQIDPAAVQQGLAEFNAKLGSAS 181
>07_03_1343 -
25905475-25905678,25907025-25907167,25907273-25907366,
25907526-25907687,25907884-25907952,25908631-25908843,
25909054-25909113,25909294-25909382,25909745-25910063
Length = 450
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 176 KHVPTLAVLRPGVVTILENDGKQNKIF 256
KH P + R G +++ E DGK+NK++
Sbjct: 233 KHPPGDEIYRSGTLSMFEVDGKKNKVY 259
>11_05_0074 +
18850567-18851095,18851249-18851274,18851353-18851645,
18851898-18852699,18852874-18853022,18853105-18853393,
18853479-18853517,18853623-18853661
Length = 721
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +2
Query: 113 AKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTI--LEND--GKQNKIF 256
A ++ Q D F G + KH P +A L P VVTI L+N+ G N I+
Sbjct: 530 ATNILGQHDGKPFLGPTNYIVKHAPEVAFLDPQVVTITNLQNNRQGMVNYIY 581
>04_01_0542 -
7005972-7007443,7008568-7008766,7008780-7008855,
7009615-7009925
Length = 685
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 200 LRPGVVTILENDGKQNKIFVSS--GTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKA 373
LR G VT D + N VS+ G +TV DDS+V+ AEE P + S+ + ++KA
Sbjct: 426 LRGGSVT----DSQLNSHCVSAIAGLLTVVDDSAVEQQAEEVLPTICV-ASSLETVMNKA 480
Query: 374 QSE 382
E
Sbjct: 481 PEE 483
>08_02_0274 -
15192670-15192983,15193110-15193200,15193295-15193603,
15193859-15193944,15196034-15196088,15196689-15196757,
15197027-15197074,15198090-15198203,15198464-15198526,
15199236-15199427,15199519-15199643,15199723-15199779,
15200209-15200332,15200478-15200543,15200656-15200738,
15200916-15201036,15201663-15201773,15201841-15201936,
15202032-15202107,15202878-15203016,15203283-15203346,
15203454-15203527,15203845-15203923,15204473-15204547
Length = 876
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/73 (26%), Positives = 38/73 (52%)
Frame = +2
Query: 179 HVPTLAVLRPGVVTILENDGKQNKIFVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQE 358
H+P ++R G ++NDG+ + +S +N ++V VL + +E D E
Sbjct: 326 HLPDHGIIRDGSKETIDNDGELARRTLSQ---DLNRHAAV-VLEGRSSDVELTDTKTVAE 381
Query: 359 ALSKAQSEFNSAS 397
A+++++ E S+S
Sbjct: 382 AIARSKKEPPSSS 394
>09_01_0069 - 1010888-1011226,1011412-1011600
Length = 175
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 274 NCARRYEDF-ILFPIIFKNCNNTRSKNSQGR 185
NC+R ++ +LFP K+ TR KN +GR
Sbjct: 136 NCSRVFDPLDLLFPFSPKSERKTRDKNDRGR 166
>02_01_0608 + 4557017-4557265
Length = 82
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 122 LVWHKRPYDPQRRXMPLRHLWEQLQSDGL 36
++WH D +RR M R W L++DGL
Sbjct: 31 IIWHFAICDERRRWMMGRSNWPCLRADGL 59
>09_03_0061 -
11967727-11967765,11967872-11967910,11967996-11968284,
11968367-11968515,11968693-11969469
Length = 430
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +2
Query: 113 AKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTI--LEND--GKQNKIF 256
A ++++ D F G + KH P +A L P VVT+ L+ND G N I+
Sbjct: 240 ATDILREHDGKPFLGPTNYI-KHAPEVAFLDPQVVTVTNLQNDRQGMVNYIY 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,024,641
Number of Sequences: 37544
Number of extensions: 175904
Number of successful extensions: 482
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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