Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_H09
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    29   0.50 
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    28   1.5  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   4.7  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    26   6.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   8.1  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   8.1  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +3

Query: 492  YYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLN 629
            Y   ++++VP P  +PE   K + +  E  +  V++  E+DG++L+
Sbjct: 1139 YLFEIIDVVPQPG-RPETRHKLKLVTREEIKGTVAVVCEVDGYLLS 1183


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +1

Query: 244 LANNFNV*KGLRIWQPQLKEQYLFRNVFQRILTLKKRCSRISTA*LTITRYYQVQQVLLC 423
           L + FN   G  + Q    +  LF+ + +++LTL+ +C  +    L    Y Q Q++   
Sbjct: 197 LTSVFNKSAGFCLVQEYCPQGDLFKQIEEKVLTLEDKCCYLKQI-LQAVAYLQSQRIA-- 253

Query: 424 HHYSLKD*NI 453
            H  LK  NI
Sbjct: 254 -HRDLKPENI 262


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 558  WFS*QLQA*SRVLGQFQQGVRNKVDSPDEKQ 466
            W+S +  A S VL QF++  R  + S  EK+
Sbjct: 1553 WYSVESNATSHVLQQFEEACRKALSSSAEKR 1583


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 264 IKGSTDLATAVKGAVFVQECVPENLDLK 347
           + G+  LAT  +GA+ VQ   P NL++K
Sbjct: 165 VSGTRVLATMAQGAIAVQRAAP-NLEIK 191


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 306 VFVQECVPENLDLKKKVFQNLDSVVDDNT 392
           V  + C   NLD+ K    NLDS++ D +
Sbjct: 219 VINKHCTSWNLDMSKSNSLNLDSIIVDTS 247


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/28 (28%), Positives = 21/28 (75%)
 Frame = +3

Query: 312  VQECVPENLDLKKKVFQNLDSVVDDNTI 395
            ++  +P  + L KK+F+N ++VV+++++
Sbjct: 1294 IRASLPTLICLSKKIFENAENVVENHSL 1321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,953
Number of Sequences: 5004
Number of extensions: 59617
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)