Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_H08
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.63 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   2.6  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   4.5  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    26   5.9  

>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 374 AFRLRHSKDNFNNKFMFHHLDLHTSDRRYKQASVMVDAAVGSAGYRFGNRLAD 532
           A ++ HS  +FN K    H+  HT + +Y    ++ D   G  G+    ++AD
Sbjct: 191 AEKMLHSIKDFNQKTTVFHM--HTRNNKYDTREIVDDIFFGGTGWAEPPKIAD 241


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 404 FNNKFMFHHLDLHTSDRRYKQASVMVD---AAVGSAGYRFGNRL 526
           FN+   F   +L+TSD R++ ASV+ D   A  G   + F ++L
Sbjct: 212 FNDLVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTFSDKL 255


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 117 ISSIYLVHNQ*LTQFSSECRVYTSNIYTR*IR 22
           ISSIY  H+  L Q  SE     SN+ +R +R
Sbjct: 486 ISSIYASHSSCLLQVKSETAAIFSNLLSRLLR 517


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 314 SPYQYDCGYRKYDAEDSSDQGSGPSRSTAAAFL 216
           S    D G+ KYD  + SD+G   ++S A + L
Sbjct: 544 SEIDLDTGFSKYDRLEESDKGPMTAKSLAKSVL 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,364,039
Number of Sequences: 5004
Number of extensions: 66756
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)