Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_H08
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    26   0.51 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.88 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   8.2  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 689 FFVTHVQVMAEYNCPKV 639
           F+  H Q+MA YNC ++
Sbjct: 234 FYYMHQQIMARYNCERL 250


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +2

Query: 161 YEIYYLSRKIISEQNEASSEMLLLCFYSDRIPDHCYPRHHTFDSHNHIDMDCQETH 328
           Y+I+  +R+I+ E+  A S +   C++ D  P     +H     +  ++ D Q  H
Sbjct: 223 YKIFCAARRIVLEERRAQSHLEAHCYF-DIEP--TVQQHQPVTVNRQLNSDVQPGH 275


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 817 ARHWKPYTYIY 849
           AR WKP TY Y
Sbjct: 83  ARIWKPDTYFY 93


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 590 FYDVIVLIEVIGNRCV 543
           FY V+++I  IGN  V
Sbjct: 43  FYSVLMIISAIGNTTV 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,826
Number of Sequences: 438
Number of extensions: 4898
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)