Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_H07
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    85   9e-18
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    81   1e-16
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    29   0.60 
SPCC1442.15c |cox18||mitochondrial inner membrane protein Cox18|...    28   1.4  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    26   5.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   7.4  

>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 85.4 bits (202), Expect = 9e-18
 Identities = 40/132 (30%), Positives = 67/132 (50%)
 Frame = +1

Query: 421 PVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQ 600
           P  ++QN    LH+   +PWW +I    + +R+ +FP+++   + SA++    P++    
Sbjct: 96  PHNILQNGLNTLHIWSGLPWWASIAACAVAMRIAVFPIMLKMMKTSAKLAIINPKVAEHM 155

Query: 601 MKMTQARQTGNQIEAARYAQEMMLFMKEKGLNPLKNLIVPLAQTPLFISFXMGLRGMANC 780
             +++A+  GN     +   ++    K   +NPL  L  P+ Q  LFISF   L+ MA  
Sbjct: 156 SVLSKAKAEGNSELMMQATTQIQNLYKVNNVNPLNLLSAPVFQGILFISFFYALKTMAGV 215

Query: 781 PVXSMTHGGLWW 816
           PV   T GG WW
Sbjct: 216 PVEGFTDGGFWW 227


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 41/134 (30%), Positives = 71/134 (52%)
 Frame = +1

Query: 415 WGPVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQL 594
           W P  L+QN    ++V    PWW +I+L T+ VR+ + P++I S RNS +++   PE++ 
Sbjct: 65  WWPYALIQNTAYTINVYAGAPWWVSIILTTLGVRLALTPVMIASFRNSTKLSVIQPEMKK 124

Query: 595 LQMKMTQARQTGNQIEAARYAQEMMLFMKEKGLNPLKNLIVPLAQTPLFISFXMGLRGMA 774
               +  A+   +Q+   +++  +     +  +NP    I+PL Q+ +F SF   +R M+
Sbjct: 125 ELEAIKTAKLDNDQLALNQHSIALRGIYLKHNVNPFAIFILPLTQSAVFFSFFYAIRKMS 184

Query: 775 NCPVXSMTHGGLWW 816
              V   T GGL W
Sbjct: 185 RLSVDGFTTGGLAW 198


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = -3

Query: 720 WNY*IFKRVQSFFFHEK----HHFLSISCSFNLISSLPGLCHF 604
           W     KR+ +FF H      +HFL+    F L S   GLC F
Sbjct: 88  WIRVFLKRIYTFFVHSARVFLYHFLNEEKEFTLASFFWGLCRF 130


>SPCC1442.15c |cox18||mitochondrial inner membrane protein
           Cox18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 202

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 679 KEKGLNPLKNLIVPLAQTPLFISFXMGLRGMAN-CPVXSMTHGGLWW 816
           K    +PL    +P+ Q PLF      LR   + CP    T G LW+
Sbjct: 73  KRFNCHPLMIYALPITQLPLFAFASYQLRQAVDVCPESMSTEGMLWF 119


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 557 LFLCDKITSGNITTLTTMVPKTIAPHHGTSKVTCRYSKQ 441
           L LC +   G  T   T+   TI  H G  KV  +++++
Sbjct: 31  LMLCGESGLGKTTFCNTLFSTTIKSHMGPEKVRAKHAEK 69


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/79 (21%), Positives = 38/79 (48%)
 Frame = +1

Query: 424  VGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQM 603
            +G+ +N    + +   + ++ +++LG + +    FPL   S  N A+ N     ++LL +
Sbjct: 1800 IGIKKNDVVAVFIDKSLDYY-SLMLGVLRIGAFFFPLEHCSSLNFAKENLLRTNVKLLIV 1858

Query: 604  KMTQARQTGNQIEAARYAQ 660
                  +  NQ+E  ++ Q
Sbjct: 1859 DKFLPFEDVNQVEIDKFRQ 1877


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,366,658
Number of Sequences: 5004
Number of extensions: 69218
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)